(23 nodes) beta-Alanine metabolism network (Pseudomonas fluorescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	gabD	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family. (496 aa)
	CEL27425.1	Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (449 aa)
	mmsA_1	Methylmalonate-semialdehyde dehydrogenase [acylating]. (497 aa)
	mmsA_2	Methylmalonate-semialdehyde dehydrogenase [acylating]. (508 aa)
	prr_1	Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (474 aa)
	prr_2	Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)
	echA8_1	Putative enoyl-CoA hydratase echA8. (370 aa)
	fadJ	Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (714 aa)
	fadB_2	Putative enoyl-CoA hydratase. (229 aa)
	gbsA_1	Betaine aldehyde dehydrogenase. (487 aa)
	caiD_1	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
	echA8_2	Putative enoyl-CoA hydratase echA8. (368 aa)
	echA8_3	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	mmgC_4	Acyl-CoA dehydrogenase. (375 aa)
	betB_1	NAD/NADP-dependent betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (493 aa)
	dht	D-hydantoinase/dihydropyrimidinase. (479 aa)
	preT	NAD-dependent dihydropyrimidine dehydrogenase subunit PreT. (455 aa)
	preA	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA. (424 aa)
	fadB_3	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (715 aa)
	caiD_3	Carnitinyl-CoA dehydratase. (263 aa)
	echA8_5	Putative enoyl-CoA hydratase echA8. (249 aa)
	panC	Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (286 aa)
	calB	Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (476 aa)

Your Current Organism:

Pseudomonas fluorescens

NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEL27425.1	fadB_3	SRM1_00752	SRM1_03790	Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.916
CEL27425.1	mmsA_1	SRM1_00752	SRM1_00753	Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.880
caiD_1	echA8_1	SRM1_02530	SRM1_01337	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative enoyl-CoA hydratase echA8.	0.445
caiD_1	echA8_2	SRM1_02530	SRM1_02733	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative enoyl-CoA hydratase echA8.	0.458
caiD_1	fadB_2	SRM1_02530	SRM1_01827	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative enoyl-CoA hydratase.	0.622
caiD_1	fadB_3	SRM1_02530	SRM1_03790	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.822
caiD_1	fadJ	SRM1_02530	SRM1_01823	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.745
caiD_1	mmgC_4	SRM1_02530	SRM1_02736	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Acyl-CoA dehydrogenase.	0.554
caiD_3	echA8_1	SRM1_03887	SRM1_01337	Carnitinyl-CoA dehydratase.	Putative enoyl-CoA hydratase echA8.	0.642
caiD_3	echA8_2	SRM1_03887	SRM1_02733	Carnitinyl-CoA dehydratase.	Putative enoyl-CoA hydratase echA8.	0.466
caiD_3	fadB_2	SRM1_03887	SRM1_01827	Carnitinyl-CoA dehydratase.	Putative enoyl-CoA hydratase.	0.523
caiD_3	fadB_3	SRM1_03887	SRM1_03790	Carnitinyl-CoA dehydratase.	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.411
caiD_3	fadJ	SRM1_03887	SRM1_01823	Carnitinyl-CoA dehydratase.	Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.589
caiD_3	mmgC_4	SRM1_03887	SRM1_02736	Carnitinyl-CoA dehydratase.	Acyl-CoA dehydrogenase.	0.575
dht	preA	SRM1_03225	SRM1_03227	D-hydantoinase/dihydropyrimidinase.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0.984
dht	preT	SRM1_03225	SRM1_03226	D-hydantoinase/dihydropyrimidinase.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreT.	0.902
echA8_1	caiD_1	SRM1_01337	SRM1_02530	Putative enoyl-CoA hydratase echA8.	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.445
echA8_1	caiD_3	SRM1_01337	SRM1_03887	Putative enoyl-CoA hydratase echA8.	Carnitinyl-CoA dehydratase.	0.642
echA8_1	echA8_3	SRM1_01337	SRM1_02735	Putative enoyl-CoA hydratase echA8.	Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.	0.461
echA8_1	echA8_5	SRM1_01337	SRM1_04392	Putative enoyl-CoA hydratase echA8.	Putative enoyl-CoA hydratase echA8.	0.402

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