STRINGSTRING
aam aam echA8_1 echA8_1 fadB_2 fadB_2 azr azr CEL29140.1 CEL29140.1 caiD_1 caiD_1 atzE atzE CEL29194.1 CEL29194.1 echA8_2 echA8_2 echA8_3 echA8_3 bsdB bsdB caiD_3 caiD_3 echA8_5 echA8_5 fdx_1 fdx_1 CEL31312.1 CEL31312.1 ubiX ubiX gatA_2 gatA_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
aamAcylamidase. (464 aa)
echA8_1Putative enoyl-CoA hydratase echA8. (370 aa)
fadB_2Putative enoyl-CoA hydratase. (229 aa)
azrFMN-dependent NADPH-azoreductase. (185 aa)
CEL29140.1Nitrilase. (307 aa)
caiD_1Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
atzEBiuret hydrolase. (517 aa)
CEL29194.1Amidase. (62 aa)
echA8_2Putative enoyl-CoA hydratase echA8. (368 aa)
echA8_3Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
bsdBPhenolic acid decarboxylase subunit B. (204 aa)
caiD_3Carnitinyl-CoA dehydratase. (263 aa)
echA8_5Putative enoyl-CoA hydratase echA8. (249 aa)
fdx_12Fe-2S ferredoxin. (113 aa)
CEL31312.1Hypothetical protein. (68 aa)
ubiXPutative aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (215 aa)
gatA_2Glutamyl-tRNA(Gln) amidotransferase subunit A. (427 aa)
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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