Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL27504.1 | xseB | SRM1_00834 | SRM1_05097 | Hypothetical protein. | Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.844 |
| CEL27896.1 | CEL27897.1 | SRM1_01228 | SRM1_01229 | Putative DNA ligase-like protein/MT0965. | Hypothetical protein. | 0.998 |
| CEL27896.1 | dnaN | SRM1_01228 | SRM1_00057 | Putative DNA ligase-like protein/MT0965. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.996 |
| CEL27896.1 | holB | SRM1_01228 | SRM1_04099 | Putative DNA ligase-like protein/MT0965. | DNA polymerase III subunit delta'. | 0.958 |
| CEL27897.1 | CEL27896.1 | SRM1_01229 | SRM1_01228 | Hypothetical protein. | Putative DNA ligase-like protein/MT0965. | 0.998 |
| CEL27897.1 | mutS | SRM1_01229 | SRM1_01162 | Hypothetical protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.415 |
| CEL28372.1 | dnaE | SRM1_01710 | SRM1_01144 | Single-stranded DNA-binding protein. | DNA polymerase III subunit alpha. | 0.740 |
| CEL28372.1 | dnaE2_2 | SRM1_01710 | SRM1_02978 | Single-stranded DNA-binding protein. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.740 |
| CEL28372.1 | dnaN | SRM1_01710 | SRM1_00057 | Single-stranded DNA-binding protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.400 |
| CEL28372.1 | dnaX | SRM1_01710 | SRM1_01899 | Single-stranded DNA-binding protein. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.840 |
| CEL28372.1 | holC | SRM1_01710 | SRM1_01032 | Single-stranded DNA-binding protein. | DNA polymerase III subunit chi. | 0.810 |
| CEL28372.1 | recJ | SRM1_01710 | SRM1_01090 | Single-stranded DNA-binding protein. | Single-stranded-DNA-specific exonuclease RecJ. | 0.453 |
| CEL28372.1 | sbcB | SRM1_01710 | SRM1_04374 | Single-stranded DNA-binding protein. | Exodeoxyribonuclease I. | 0.629 |
| CEL29335.1 | dnaE | SRM1_02686 | SRM1_01144 | Hypothetical protein. | DNA polymerase III subunit alpha. | 0.569 |
| CEL29335.1 | dnaE2_2 | SRM1_02686 | SRM1_02978 | Hypothetical protein. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.569 |
| CEL29335.1 | dnaN | SRM1_02686 | SRM1_00057 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.716 |
| CEL29335.1 | dnaX | SRM1_02686 | SRM1_01899 | Hypothetical protein. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.679 |
| CEL29335.1 | holA | SRM1_02686 | SRM1_05034 | Hypothetical protein. | DNA polymerase III subunit delta. | 0.475 |
| dnaE | CEL28372.1 | SRM1_01144 | SRM1_01710 | DNA polymerase III subunit alpha. | Single-stranded DNA-binding protein. | 0.740 |
| dnaE | CEL29335.1 | SRM1_01144 | SRM1_02686 | DNA polymerase III subunit alpha. | Hypothetical protein. | 0.569 |
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