STRINGSTRING
YLM1_0582 YLM1_0582 YLM1_1122 YLM1_1122 hypA hypA YLM1_0896 YLM1_0896 YLM1_1485 YLM1_1485 YLM1_1441 YLM1_1441 YLM1_1362 YLM1_1362 YLM1_1341 YLM1_1341 hypA-2 hypA-2 YLM1_1805 YLM1_1805 YLM1_1807 YLM1_1807 YLM1_1808 YLM1_1808
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
YLM1_0582Nickel responsive transcriptional regulator NikR; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (147 aa)
YLM1_1122Hydrogenase accessory protein HypB. (225 aa)
hypAHydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (120 aa)
YLM1_0896Energy-converting hydrogenase A subunit O EhaO; Belongs to the complex I 49 kDa subunit family. (378 aa)
YLM1_1485Hypothetical protein. (166 aa)
YLM1_1441Energy-converting hydrogenase B subunit N EhbN. (391 aa)
YLM1_1362Methyl viologen-reducing hydrogenase alpha subunit MvhA. (474 aa)
YLM1_1341Hypothetical protein; Belongs to the LarC family. (424 aa)
hypA-2Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (127 aa)
YLM1_1805Coenzyme F420 hydrogenase alpha subunit FrhA; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (405 aa)
YLM1_1807Coenzyme F420 hydrogenase gamma subunit FrhG. (312 aa)
YLM1_1808Coenzyme F420 hydrogenase beta subunit FrhB. (281 aa)
Your Current Organism:
Methanobrevibacter olleyae
NCBI taxonomy Id: 294671
Other names: DSM 16632, M. olleyae, Methanobrevibacter olleyae Rea et al. 2007, Methanobrevibacter sp. KM1H5-1P, OCM 841, strain KM1H5-1P
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