STRINGSTRING
YLM1_0056 YLM1_0056 YLM1_0141 YLM1_0141 YLM1_0214 YLM1_0214 YLM1_0215 YLM1_0215 YLM1_0216 YLM1_0216 YLM1_0217 YLM1_0217 YLM1_0220 YLM1_0220 YLM1_0334 YLM1_0334 YLM1_0430 YLM1_0430 YLM1_0434 YLM1_0434 YLM1_0649 YLM1_0649 YLM1_0935 YLM1_0935 YLM1_1056 YLM1_1056 YLM1_1129 YLM1_1129 YLM1_1286 YLM1_1286 YLM1_1287 YLM1_1287 YLM1_1339 YLM1_1339 YLM1_1350 YLM1_1350 YLM1_1353 YLM1_1353 YLM1_1468 YLM1_1468 YLM1_1594 YLM1_1594 YLM1_1661 YLM1_1661
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
YLM1_0056Homocitrate synthase AksA; Belongs to the alpha-IPM synthase/homocitrate synthase family. (392 aa)
YLM1_0141Glutathione-disulfide reductase Gor. (460 aa)
YLM1_0214Pyruvate ferredoxin oxidoreductase gamma subunit PorC. (173 aa)
YLM1_0215Pyruvate ferredoxin oxidoreductase delta subunit PorD. (80 aa)
YLM1_0216Pyruvate ferredoxin oxidoreductase alpha subunit PorA. (382 aa)
YLM1_0217Pyruvate ferredoxin oxidoreductase beta subunit PorB. (288 aa)
YLM1_0220Fumarate hydratase FumA. (279 aa)
YLM1_0334Fumarate hydratase FumA. (294 aa)
YLM1_0430Fumarate hydratase FumA. (183 aa)
YLM1_0434Pyruvate carboxylase subunit A PycA. (496 aa)
YLM1_0649Malate dehydrogenase Mdh; Belongs to the LDH/MDH superfamily. (318 aa)
YLM1_0935acetyl-CoA synthetase AcsA. (556 aa)
YLM1_1056ADP-dependent acetyl-CoA synthetase Acs. (699 aa)
YLM1_1129acetyl-CoA acetyltransferase. (386 aa)
YLM1_12862-oxoglutarate ferredoxin oxidoreductase subunit beta KorB. (287 aa)
YLM1_12872-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA. (377 aa)
YLM1_1339Pyruvate carboxylase subunit B PycB. (576 aa)
YLM1_1350Fumarate hydratase FumA. (166 aa)
YLM1_1353Phosphoenolpyruvate synthase PpsA; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (757 aa)
YLM1_1468Metallo-beta-lactamase superfamily protein. (215 aa)
YLM1_1594Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (497 aa)
YLM1_16612-isopropylmalate synthase LeuA; Belongs to the alpha-IPM synthase/homocitrate synthase family. (511 aa)
Your Current Organism:
Methanobrevibacter olleyae
NCBI taxonomy Id: 294671
Other names: DSM 16632, M. olleyae, Methanobrevibacter olleyae Rea et al. 2007, Methanobrevibacter sp. KM1H5-1P, OCM 841, strain KM1H5-1P
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