(13 nodes) Mixed, incl. Endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), and rRNA-processing protein Fcf1/Utp23 network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_00040	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (243 aa)
	PGUG_01600	Uncharacterized protein. (859 aa)
	PGUG_01694	WD_REPEATS_REGION domain-containing protein. (487 aa)
	PGUG_01827	Uncharacterized protein. (775 aa)
	PGUG_02711	Uncharacterized protein. (789 aa)
	PGUG_02826	PINc domain-containing protein. (214 aa)
	ROK1	ATP-dependent RNA helicase ROK1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (537 aa)
	PGUG_03304	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (340 aa)
	PGUG_03307	Nucleolar essential protein 1. (247 aa)
	PGUG_03573	WD_REPEATS_REGION domain-containing protein. (461 aa)
	PGUG_04138	CBF domain-containing protein. (532 aa)
	PGUG_05282	Uncharacterized protein. (1674 aa)
	RRP3	ATP-dependent rRNA helicase RRP3; Required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA (By similarity). (475 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00040	PGUG_01600	A5D9T5	A5DE99	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.996
PGUG_00040	PGUG_01694	A5D9T5	A5DEJ3	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.999
PGUG_00040	PGUG_01827	A5D9T5	A5DEX6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.998
PGUG_00040	PGUG_02711	A5D9T5	A5DHG0	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.941
PGUG_00040	PGUG_02826	A5D9T5	A5DHS5	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	PINc domain-containing protein.	0.999
PGUG_00040	PGUG_03304	A5D9T5	A5DJ53	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
PGUG_00040	PGUG_03307	A5D9T5	A5DJ56	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Nucleolar essential protein 1.	0.998
PGUG_00040	PGUG_03573	A5D9T5	A5DJX2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.999
PGUG_00040	PGUG_04138	A5D9T5	A5DLI7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	CBF domain-containing protein.	0.999
PGUG_00040	PGUG_05282	A5D9T5	A5DPT1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.996
PGUG_00040	ROK1	A5D9T5	A5DIX5	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	ATP-dependent RNA helicase ROK1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA.	0.985
PGUG_00040	RRP3	A5D9T5	A5DQF1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	ATP-dependent rRNA helicase RRP3; Required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA (By similarity).	0.977
PGUG_01600	PGUG_00040	A5DE99	A5D9T5	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.996
PGUG_01600	PGUG_01694	A5DE99	A5DEJ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
PGUG_01600	PGUG_01827	A5DE99	A5DEX6	Uncharacterized protein.	Uncharacterized protein.	0.998
PGUG_01600	PGUG_02711	A5DE99	A5DHG0	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_01600	PGUG_02826	A5DE99	A5DHS5	Uncharacterized protein.	PINc domain-containing protein.	0.999
PGUG_01600	PGUG_03304	A5DE99	A5DJ53	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
PGUG_01600	PGUG_03307	A5DE99	A5DJ56	Uncharacterized protein.	Nucleolar essential protein 1.	0.990
PGUG_01600	PGUG_03573	A5DE99	A5DJX2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998