(11 nodes) Regulation of mRNA processing, and Peptidyl-tyrosine modification network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_00440	Flavin_Reduct domain-containing protein. (260 aa)
	PGUG_00587	Protein kinase domain-containing protein. (667 aa)
	PGUG_01514	NmrA domain-containing protein. (293 aa)
	PGUG_01728	Protein kinase domain-containing protein. (802 aa)
	PGUG_02022	Uncharacterized protein. (451 aa)
	PGUG_02675	Importin N-terminal domain-containing protein. (941 aa)
	PGUG_03603	Protein kinase domain-containing protein. (644 aa)
	PGUG_04213	Uncharacterized protein. (306 aa)
	PGUG_04281	Uncharacterized protein. (264 aa)
	PGUG_04978	RRM domain-containing protein. (251 aa)
	PGUG_05305	Importin N-terminal domain-containing protein. (924 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00587	PGUG_04978	A5DBD2	A5DNX7	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.837
PGUG_01514	PGUG_04978	A5DE13	A5DNX7	NmrA domain-containing protein.	RRM domain-containing protein.	0.771
PGUG_01728	PGUG_04978	A5DEM7	A5DNX7	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.837
PGUG_02022	PGUG_04213	A5DFH1	A5DLR2	Uncharacterized protein.	Uncharacterized protein.	0.972
PGUG_02022	PGUG_04978	A5DFH1	A5DNX7	Uncharacterized protein.	RRM domain-containing protein.	0.506
PGUG_02022	PGUG_05305	A5DFH1	A5DPV4	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.886
PGUG_02675	PGUG_04978	A5DHC4	A5DNX7	Importin N-terminal domain-containing protein.	RRM domain-containing protein.	0.920
PGUG_02675	PGUG_05305	A5DHC4	A5DPV4	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.599
PGUG_04213	PGUG_02022	A5DLR2	A5DFH1	Uncharacterized protein.	Uncharacterized protein.	0.972
PGUG_04213	PGUG_04281	A5DLR2	A5DLY0	Uncharacterized protein.	Uncharacterized protein.	0.484
PGUG_04213	PGUG_04978	A5DLR2	A5DNX7	Uncharacterized protein.	RRM domain-containing protein.	0.621
PGUG_04213	PGUG_05305	A5DLR2	A5DPV4	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.812
PGUG_04281	PGUG_04213	A5DLY0	A5DLR2	Uncharacterized protein.	Uncharacterized protein.	0.484
PGUG_04281	PGUG_04978	A5DLY0	A5DNX7	Uncharacterized protein.	RRM domain-containing protein.	0.825
PGUG_04978	PGUG_00587	A5DNX7	A5DBD2	RRM domain-containing protein.	Protein kinase domain-containing protein.	0.837
PGUG_04978	PGUG_01514	A5DNX7	A5DE13	RRM domain-containing protein.	NmrA domain-containing protein.	0.771
PGUG_04978	PGUG_01728	A5DNX7	A5DEM7	RRM domain-containing protein.	Protein kinase domain-containing protein.	0.837
PGUG_04978	PGUG_02022	A5DNX7	A5DFH1	RRM domain-containing protein.	Uncharacterized protein.	0.506
PGUG_04978	PGUG_02675	A5DNX7	A5DHC4	RRM domain-containing protein.	Importin N-terminal domain-containing protein.	0.920
PGUG_04978	PGUG_04213	A5DNX7	A5DLR2	RRM domain-containing protein.	Uncharacterized protein.	0.621