(6 nodes) Mixed, incl. Nuclear pore cytoplasmic filaments, and Regulation of RNA export from nucleus network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_00176	Uncharacterized protein. (969 aa)
	PGUG_00277	Uncharacterized protein. (471 aa)
	PGUG_00959	Peptidase S59 domain-containing protein. (1068 aa)
	PGUG_03508	Uncharacterized protein. (367 aa)
	PGUG_03821	Uncharacterized protein. (577 aa)
	PGUG_05028	Nsp1_C domain-containing protein. (200 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00176	PGUG_00277	A5DA71	A5DAH2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_00176	PGUG_00959	A5DA71	A5DCF4	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.999
PGUG_00176	PGUG_03508	A5DA71	A5DJQ7	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_00176	PGUG_03821	A5DA71	A5DKM0	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_00176	PGUG_05028	A5DA71	A5DP27	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.996
PGUG_00277	PGUG_00176	A5DAH2	A5DA71	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_00277	PGUG_00959	A5DAH2	A5DCF4	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.651
PGUG_00277	PGUG_03508	A5DAH2	A5DJQ7	Uncharacterized protein.	Uncharacterized protein.	0.956
PGUG_00277	PGUG_03821	A5DAH2	A5DKM0	Uncharacterized protein.	Uncharacterized protein.	0.827
PGUG_00277	PGUG_05028	A5DAH2	A5DP27	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.999
PGUG_00959	PGUG_00176	A5DCF4	A5DA71	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.999
PGUG_00959	PGUG_00277	A5DCF4	A5DAH2	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.651
PGUG_00959	PGUG_03508	A5DCF4	A5DJQ7	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.993
PGUG_00959	PGUG_03821	A5DCF4	A5DKM0	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.902
PGUG_00959	PGUG_05028	A5DCF4	A5DP27	Peptidase S59 domain-containing protein.	Nsp1_C domain-containing protein.	0.999
PGUG_03508	PGUG_00176	A5DJQ7	A5DA71	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_03508	PGUG_00277	A5DJQ7	A5DAH2	Uncharacterized protein.	Uncharacterized protein.	0.956
PGUG_03508	PGUG_00959	A5DJQ7	A5DCF4	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.993
PGUG_03508	PGUG_03821	A5DJQ7	A5DKM0	Uncharacterized protein.	Uncharacterized protein.	0.998
PGUG_03508	PGUG_05028	A5DJQ7	A5DP27	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.999