(6 nodes) GATOR1 complex, and Gtr1/RagA G protein network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NPR3	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity). (787 aa)
	PGUG_01913	Uncharacterized protein. (327 aa)
	PGUG_03983	DEP domain-containing protein. (1500 aa)
	PGUG_05131	Uncharacterized protein. (325 aa)
	PGUG_05564	Uncharacterized protein. (588 aa)
	PGUG_05720	Uncharacterized protein. (761 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NPR3	PGUG_01913	A5D9Y9	A5DF62	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	Uncharacterized protein.	0.958
NPR3	PGUG_03983	A5D9Y9	A5DL32	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	DEP domain-containing protein.	0.999
NPR3	PGUG_05131	A5D9Y9	A5DPD0	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	Uncharacterized protein.	0.965
NPR3	PGUG_05564	A5D9Y9	A5DQL3	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	Uncharacterized protein.	0.999
NPR3	PGUG_05720	A5D9Y9	A5DR19	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	Uncharacterized protein.	0.998
PGUG_01913	NPR3	A5DF62	A5D9Y9	Uncharacterized protein.	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	0.958
PGUG_01913	PGUG_03983	A5DF62	A5DL32	Uncharacterized protein.	DEP domain-containing protein.	0.952
PGUG_01913	PGUG_05131	A5DF62	A5DPD0	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_01913	PGUG_05564	A5DF62	A5DQL3	Uncharacterized protein.	Uncharacterized protein.	0.938
PGUG_01913	PGUG_05720	A5DF62	A5DR19	Uncharacterized protein.	Uncharacterized protein.	0.957
PGUG_03983	NPR3	A5DL32	A5D9Y9	DEP domain-containing protein.	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	0.999
PGUG_03983	PGUG_01913	A5DL32	A5DF62	DEP domain-containing protein.	Uncharacterized protein.	0.952
PGUG_03983	PGUG_05131	A5DL32	A5DPD0	DEP domain-containing protein.	Uncharacterized protein.	0.958
PGUG_03983	PGUG_05564	A5DL32	A5DQL3	DEP domain-containing protein.	Uncharacterized protein.	0.999
PGUG_03983	PGUG_05720	A5DL32	A5DR19	DEP domain-containing protein.	Uncharacterized protein.	0.997
PGUG_05131	NPR3	A5DPD0	A5D9Y9	Uncharacterized protein.	Nitrogen permease regulator 3; Mediates inactivation of the TORC1 complex in response to amino acid starvation. Required for meiotic nuclear division (By similarity).	0.965
PGUG_05131	PGUG_01913	A5DPD0	A5DF62	Uncharacterized protein.	Uncharacterized protein.	0.999
PGUG_05131	PGUG_03983	A5DPD0	A5DL32	Uncharacterized protein.	DEP domain-containing protein.	0.958
PGUG_05131	PGUG_05564	A5DPD0	A5DQL3	Uncharacterized protein.	Uncharacterized protein.	0.965
PGUG_05131	PGUG_05720	A5DPD0	A5DR19	Uncharacterized protein.	Uncharacterized protein.	0.958