(4 nodes) Mpp10 complex network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_04921	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (583 aa)
	PGUG_00686	Bms1-type G domain-containing protein. (1177 aa)
	PGUG_01983	Brix domain-containing protein. (302 aa)
	PGUG_02565	S4 RNA-binding domain-containing protein. (183 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00686	PGUG_01983	A5DBN1	A5DFD2	Bms1-type G domain-containing protein.	Brix domain-containing protein.	0.995
PGUG_00686	PGUG_02565	A5DBN1	A5DH14	Bms1-type G domain-containing protein.	S4 RNA-binding domain-containing protein.	0.996
PGUG_00686	PGUG_04921	A5DBN1	A5DNS0	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.998
PGUG_01983	PGUG_00686	A5DFD2	A5DBN1	Brix domain-containing protein.	Bms1-type G domain-containing protein.	0.995
PGUG_01983	PGUG_02565	A5DFD2	A5DH14	Brix domain-containing protein.	S4 RNA-binding domain-containing protein.	0.999
PGUG_01983	PGUG_04921	A5DFD2	A5DNS0	Brix domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
PGUG_02565	PGUG_00686	A5DH14	A5DBN1	S4 RNA-binding domain-containing protein.	Bms1-type G domain-containing protein.	0.996
PGUG_02565	PGUG_01983	A5DH14	A5DFD2	S4 RNA-binding domain-containing protein.	Brix domain-containing protein.	0.999
PGUG_02565	PGUG_04921	A5DH14	A5DNS0	S4 RNA-binding domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
PGUG_04921	PGUG_00686	A5DNS0	A5DBN1	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	Bms1-type G domain-containing protein.	0.998
PGUG_04921	PGUG_01983	A5DNS0	A5DFD2	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	Brix domain-containing protein.	0.999
PGUG_04921	PGUG_02565	A5DNS0	A5DH14	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	S4 RNA-binding domain-containing protein.	0.999