(22 nodes) Small GTPase network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_01577	Uncharacterized protein. (202 aa)
	PGUG_05742	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (717 aa)
	PGUG_05570	Uncharacterized protein. (180 aa)
	PGUG_05353	Uncharacterized protein. (136 aa)
	PGUG_05137	Uncharacterized protein. (215 aa)
	PGUG_04858	Uncharacterized protein. (216 aa)
	PGUG_04753	Uncharacterized protein. (228 aa)
	PGUG_04708	Uncharacterized protein. (170 aa)
	PGUG_04396	Cell division control protein 42. (191 aa)
	PGUG_04382	Uncharacterized protein. (254 aa)
	PGUG_04148	Uncharacterized protein. (186 aa)
	PGUG_04122	Uncharacterized protein. (218 aa)
	PGUG_03860	Uncharacterized protein. (258 aa)
	PGUG_02546	Uncharacterized protein. (209 aa)
	PGUG_02279	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (214 aa)
	PGUG_01991	Uncharacterized protein. (182 aa)
	PGUG_01959	Uncharacterized protein. (212 aa)
	PGUG_01737	Protein RHO1. (197 aa)
	PGUG_01522	Uncharacterized protein. (144 aa)
	PGUG_01437	Uncharacterized protein. (205 aa)
	PGUG_00754	GTP-binding protein YPTC1. (207 aa)
	PGUG_00557	Uncharacterized protein. (302 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00557	PGUG_00754	A5DBA2	A5DBU9	Uncharacterized protein.	GTP-binding protein YPTC1.	0.408
PGUG_00557	PGUG_01437	A5DBA2	A5DDT6	Uncharacterized protein.	Uncharacterized protein.	0.414
PGUG_00557	PGUG_01522	A5DBA2	A5DE21	Uncharacterized protein.	Uncharacterized protein.	0.423
PGUG_00557	PGUG_03860	A5DBA2	A5DKQ9	Uncharacterized protein.	Uncharacterized protein.	0.437
PGUG_00557	PGUG_04396	A5DBA2	A5DM95	Uncharacterized protein.	Cell division control protein 42.	0.512
PGUG_00557	PGUG_04753	A5DBA2	A5DNA2	Uncharacterized protein.	Uncharacterized protein.	0.422
PGUG_00557	PGUG_04858	A5DBA2	A5DNK7	Uncharacterized protein.	Uncharacterized protein.	0.523
PGUG_00557	PGUG_05353	A5DBA2	A5DQ02	Uncharacterized protein.	Uncharacterized protein.	0.625
PGUG_00754	PGUG_00557	A5DBU9	A5DBA2	GTP-binding protein YPTC1.	Uncharacterized protein.	0.408
PGUG_00754	PGUG_01437	A5DBU9	A5DDT6	GTP-binding protein YPTC1.	Uncharacterized protein.	0.969
PGUG_00754	PGUG_01522	A5DBU9	A5DE21	GTP-binding protein YPTC1.	Uncharacterized protein.	0.419
PGUG_00754	PGUG_01577	A5DBU9	A5DE76	GTP-binding protein YPTC1.	Uncharacterized protein.	0.432
PGUG_00754	PGUG_01737	A5DBU9	A5DEN6	GTP-binding protein YPTC1.	Protein RHO1.	0.442
PGUG_00754	PGUG_01959	A5DBU9	A5DFA8	GTP-binding protein YPTC1.	Uncharacterized protein.	0.471
PGUG_00754	PGUG_01991	A5DBU9	A5DFE0	GTP-binding protein YPTC1.	Uncharacterized protein.	0.429
PGUG_00754	PGUG_02546	A5DBU9	A5DGZ5	GTP-binding protein YPTC1.	Uncharacterized protein.	0.461
PGUG_00754	PGUG_03860	A5DBU9	A5DKQ9	GTP-binding protein YPTC1.	Uncharacterized protein.	0.434
PGUG_00754	PGUG_04122	A5DBU9	A5DLH1	GTP-binding protein YPTC1.	Uncharacterized protein.	0.884
PGUG_00754	PGUG_04148	A5DBU9	A5DLJ7	GTP-binding protein YPTC1.	Uncharacterized protein.	0.450
PGUG_00754	PGUG_04753	A5DBU9	A5DNA2	GTP-binding protein YPTC1.	Uncharacterized protein.	0.593