(70 nodes) Zinc finger, RING/FYVE/PHD-type network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_04932	RING-type domain-containing protein. (446 aa)
	PGUG_05567	RING-type domain-containing protein. (536 aa)
	PGUG_05503	Uncharacterized protein. (321 aa)
	PGUG_05283	Uncharacterized protein. (561 aa)
	PGUG_05147	Uncharacterized protein. (1711 aa)
	PGUG_05103	RING-type domain-containing protein. (145 aa)
	PGUG_05098	RING-type domain-containing protein. (402 aa)
	PGUG_05055	FYVE-type domain-containing protein. (653 aa)
	PGUG_05042	Chromatin modification-related protein. (265 aa)
	PGUG_04942	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (488 aa)
	PGUG_04701	Uncharacterized protein. (717 aa)
	PGUG_04561	RING-type domain-containing protein. (470 aa)
	PGUG_04512	PHD-type domain-containing protein. (360 aa)
	PGUG_04380	Uncharacterized protein. (631 aa)
	PGUG_04194	RING-type domain-containing protein. (597 aa)
	PGUG_04170	U-box domain-containing protein. (197 aa)
	PGUG_04097	RING-type domain-containing protein. (553 aa)
	PGUG_03993	Uncharacterized protein. (475 aa)
	PGUG_03889	SP-RING-type domain-containing protein. (291 aa)
	PGUG_03782	RING-type domain-containing protein. (274 aa)
	PGUG_03716	SP-RING-type domain-containing protein. (408 aa)
	PGUG_03707	FYVE-type domain-containing protein. (588 aa)
	PGUG_03680	RING-type domain-containing protein. (321 aa)
	PGUG_03608	HTH TFE/IIEalpha-type domain-containing protein. (380 aa)
	PGUG_03560	Ubiquitin carboxyl-terminal hydrolase. (516 aa)
	PGUG_03434	Uncharacterized protein. (1033 aa)
	PGUG_03199	Uncharacterized protein. (809 aa)
	PGUG_03024	Uncharacterized protein. (270 aa)
	PGUG_02867	RING-type domain-containing protein. (796 aa)
	PGUG_02830	Uncharacterized protein. (1432 aa)
	PGUG_02720	Uncharacterized protein. (2221 aa)
	PGUG_02717	Ubiquitin carboxyl-terminal hydrolase. (801 aa)
	PGUG_02715	Uncharacterized protein. (1155 aa)
	PGUG_02574	Uncharacterized protein. (725 aa)
	PGUG_02557	Uncharacterized protein. (1006 aa)
	PGUG_02554	RBR-type E3 ubiquitin transferase. (534 aa)
	PGUG_02476	RING-CH-type domain-containing protein. (1133 aa)
	PGUG_02423	Uncharacterized protein. (466 aa)
	PGUG_02418	Uncharacterized protein. (847 aa)
	PGUG_02380	U-box domain-containing protein. (1017 aa)
	PGUG_02180	E3 ubiquitin protein ligase. (649 aa)
	SLX1	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (295 aa)
	PGUG_02152	RBR-type E3 ubiquitin transferase. (472 aa)
	PGUG_02083	Uncharacterized protein. (245 aa)
	PGUG_01924	RING-type domain-containing protein. (523 aa)
	PGUG_01644	Uncharacterized protein. (525 aa)
	PGUG_01539	Uncharacterized protein. (1397 aa)
	PGUG_01521	Chromatin modification-related protein. (306 aa)
	PGUG_01510	RING-type domain-containing protein. (241 aa)
	PGUG_01371	RING-type domain-containing protein. (625 aa)
	PGUG_01361	Uncharacterized protein. (1103 aa)
	BYE1	Transcription factor BYE1; Negative regulator of transcription elongation. Belongs to the BYE1 family. (752 aa)
	PGUG_01244	RING-type domain-containing protein. (1616 aa)
	PGUG_01115	RING-type domain-containing protein. (136 aa)
	PGUG_01060	Uncharacterized protein. (487 aa)
	PGUG_01039	RING-type domain-containing protein. (407 aa)
	PGUG_00931	RING-type domain-containing protein. (362 aa)
	PGUG_00900	RING-type domain-containing protein. (502 aa)
	PGUG_00892	Uncharacterized protein. (378 aa)
	PGUG_00830	E3 ubiquitin-protein ligase PEP5. (970 aa)
	PGUG_00643	FYVE-type domain-containing protein. (409 aa)
	PGUG_00451	Uncharacterized protein. (1002 aa)
	PGUG_00347	UBR-type domain-containing protein. (456 aa)
	PGUG_00344	RING-type domain-containing protein. (370 aa)
	PGUG_00304	Uncharacterized protein. (587 aa)
	PGUG_00253	PHD-type domain-containing protein. (709 aa)
	PGUG_00199	U-box domain-containing protein. (289 aa)
	PGUG_00174	PHD domain-containing protein. (368 aa)
	PGUG_00097	Uncharacterized protein. (701 aa)
	PGUG_00030	PHD domain-containing protein. (241 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00030	PGUG_01539	A5D9S5	A5DE38	PHD domain-containing protein.	Uncharacterized protein.	0.459
PGUG_00030	PGUG_04380	A5D9S5	A5DM79	PHD domain-containing protein.	Uncharacterized protein.	0.661
PGUG_00174	PGUG_03199	A5DA69	A5DIU8	PHD domain-containing protein.	Uncharacterized protein.	0.476
PGUG_00199	PGUG_02380	A5DA94	A5DGH9	U-box domain-containing protein.	U-box domain-containing protein.	0.414
PGUG_00199	PGUG_04170	A5DA94	A5DLL9	U-box domain-containing protein.	U-box domain-containing protein.	0.914
PGUG_00253	PGUG_05147	A5DAE8	A5DPE6	PHD-type domain-containing protein.	Uncharacterized protein.	0.576
PGUG_00304	PGUG_01244	A5DAJ9	A5DD93	Uncharacterized protein.	RING-type domain-containing protein.	0.565
PGUG_00304	PGUG_04194	A5DAJ9	A5DLP3	Uncharacterized protein.	RING-type domain-containing protein.	0.426
PGUG_00344	PGUG_02476	A5DAN9	A5DGS5	RING-type domain-containing protein.	RING-CH-type domain-containing protein.	0.409
PGUG_00344	PGUG_05567	A5DAN9	A5DQL6	RING-type domain-containing protein.	RING-type domain-containing protein.	0.900
PGUG_00451	PGUG_00892	A5DAZ6	A5DC87	Uncharacterized protein.	Uncharacterized protein.	0.685
PGUG_00830	PGUG_03434	A5DC25	A5DJI3	E3 ubiquitin-protein ligase PEP5.	Uncharacterized protein.	0.996
PGUG_00830	PGUG_05055	A5DC25	A5DP54	E3 ubiquitin-protein ligase PEP5.	FYVE-type domain-containing protein.	0.586
PGUG_00892	PGUG_00451	A5DC87	A5DAZ6	Uncharacterized protein.	Uncharacterized protein.	0.685
PGUG_00892	PGUG_01361	A5DC87	A5DDL0	Uncharacterized protein.	Uncharacterized protein.	0.753
PGUG_00892	PGUG_02715	A5DC87	A5DHG4	Uncharacterized protein.	Uncharacterized protein.	0.874
PGUG_00892	PGUG_02830	A5DC87	A5DHS9	Uncharacterized protein.	Uncharacterized protein.	0.716
PGUG_01039	PGUG_02476	A5DCN4	A5DGS5	RING-type domain-containing protein.	RING-CH-type domain-containing protein.	0.409
PGUG_01060	PGUG_02717	A5DCQ5	A5DHG6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.549
PGUG_01244	PGUG_00304	A5DD93	A5DAJ9	RING-type domain-containing protein.	Uncharacterized protein.	0.565