(18 nodes) SNF2-like, N-terminal domain superfamily network (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGUG_04323	Uncharacterized protein. (1367 aa)
	PGUG_04153	Uncharacterized protein. (990 aa)
	PGUG_03649	Uncharacterized protein. (1117 aa)
	PGUG_05597	Uncharacterized protein. (814 aa)
	PGUG_04902	Uncharacterized protein. (1034 aa)
	PGUG_05269	Uncharacterized protein. (593 aa)
	PGUG_02715	Uncharacterized protein. (1155 aa)
	PGUG_02656	Uncharacterized protein. (1224 aa)
	PGUG_02418	Uncharacterized protein. (847 aa)
	PGUG_01905	Uncharacterized protein. (761 aa)
	PGUG_00422	Uncharacterized protein. (1057 aa)
	PGUG_00450	Helicase ATP-binding domain-containing protein. (691 aa)
	PGUG_00571	Uncharacterized protein. (1263 aa)
	PGUG_00999	Uncharacterized protein. (542 aa)
	PGUG_01361	Uncharacterized protein. (1103 aa)
	PGUG_01392	Uncharacterized protein. (888 aa)
	PGUG_01477	Uncharacterized protein. (1895 aa)
	PGUG_01880	Uncharacterized protein. (952 aa)

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGUG_00450	PGUG_00999	A5DAZ5	A5DCJ4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.414
PGUG_00450	PGUG_02715	A5DAZ5	A5DHG4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.421
PGUG_00571	PGUG_00999	A5DBB6	A5DCJ4	Uncharacterized protein.	Uncharacterized protein.	0.500
PGUG_00571	PGUG_01392	A5DBB6	A5DDP1	Uncharacterized protein.	Uncharacterized protein.	0.544
PGUG_00571	PGUG_02656	A5DBB6	A5DHA5	Uncharacterized protein.	Uncharacterized protein.	0.456
PGUG_00571	PGUG_05269	A5DBB6	A5DPR8	Uncharacterized protein.	Uncharacterized protein.	0.475
PGUG_00571	PGUG_05597	A5DBB6	A5DQP6	Uncharacterized protein.	Uncharacterized protein.	0.482
PGUG_00999	PGUG_00450	A5DCJ4	A5DAZ5	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.414
PGUG_00999	PGUG_00571	A5DCJ4	A5DBB6	Uncharacterized protein.	Uncharacterized protein.	0.500
PGUG_01392	PGUG_00571	A5DDP1	A5DBB6	Uncharacterized protein.	Uncharacterized protein.	0.544
PGUG_01392	PGUG_02715	A5DDP1	A5DHG4	Uncharacterized protein.	Uncharacterized protein.	0.480
PGUG_01392	PGUG_05597	A5DDP1	A5DQP6	Uncharacterized protein.	Uncharacterized protein.	0.957
PGUG_01477	PGUG_04153	A5DDX6	A5DLK2	Uncharacterized protein.	Uncharacterized protein.	0.428
PGUG_01477	PGUG_04902	A5DDX6	A5DNQ1	Uncharacterized protein.	Uncharacterized protein.	0.428
PGUG_01905	PGUG_03649	A5DF54	A5DK48	Uncharacterized protein.	Uncharacterized protein.	0.467
PGUG_01905	PGUG_04323	A5DF54	A5DM22	Uncharacterized protein.	Uncharacterized protein.	0.421
PGUG_02418	PGUG_03649	A5DGL7	A5DK48	Uncharacterized protein.	Uncharacterized protein.	0.612
PGUG_02656	PGUG_00571	A5DHA5	A5DBB6	Uncharacterized protein.	Uncharacterized protein.	0.456
PGUG_02715	PGUG_00450	A5DHG4	A5DAZ5	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.421
PGUG_02715	PGUG_01392	A5DHG4	A5DDP1	Uncharacterized protein.	Uncharacterized protein.	0.480