(12 nodes) Mixed, incl. Histone deacetylase domain, and Set3 complex network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNBG_0503	SANT domain-containing protein. (1594 aa)
	CNBG_0917	Uncharacterized protein. (696 aa)
	CNBG_1970	Uncharacterized protein. (1543 aa)
	CNBG_1847	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (469 aa)
	CNBG_3588	Uncharacterized protein. (677 aa)
	CNBG_4905	Uncharacterized protein. (223 aa)
	CNBG_6068	Uncharacterized protein. (236 aa)
	CNBG_3244	Histone deacetylase 1/2. (613 aa)
	CNBG_3873	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (734 aa)
	CNBG_4309	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (475 aa)
	CNBG_0361	Uncharacterized protein. (775 aa)
	CNBG_5891	WD_REPEATS_REGION domain-containing protein. (564 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0361	CNBG_0503	A0A095EAF3	A0A095C130	Uncharacterized protein.	SANT domain-containing protein.	0.795
CNBG_0361	CNBG_0917	A0A095EAF3	A0A095C5X0	Uncharacterized protein.	Uncharacterized protein.	0.640
CNBG_0361	CNBG_1847	A0A095EAF3	A0A095C8Q2	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.697
CNBG_0361	CNBG_3244	A0A095EAF3	A0A095D8K8	Uncharacterized protein.	Histone deacetylase 1/2.	0.697
CNBG_0361	CNBG_3588	A0A095EAF3	A0A095CB18	Uncharacterized protein.	Uncharacterized protein.	0.722
CNBG_0361	CNBG_3873	A0A095EAF3	A0A095DBL5	Uncharacterized protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.704
CNBG_0361	CNBG_4309	A0A095EAF3	A0A095DC49	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.697
CNBG_0361	CNBG_4905	A0A095EAF3	A0A095CFT5	Uncharacterized protein.	Uncharacterized protein.	0.722
CNBG_0361	CNBG_5891	A0A095EAF3	A0A095ET38	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.669
CNBG_0361	CNBG_6068	A0A095EAF3	A0A095CIS2	Uncharacterized protein.	Uncharacterized protein.	0.683
CNBG_0503	CNBG_0361	A0A095C130	A0A095EAF3	SANT domain-containing protein.	Uncharacterized protein.	0.795
CNBG_0503	CNBG_0917	A0A095C130	A0A095C5X0	SANT domain-containing protein.	Uncharacterized protein.	0.857
CNBG_0503	CNBG_1847	A0A095C130	A0A095C8Q2	SANT domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.870
CNBG_0503	CNBG_1970	A0A095C130	A0A095C6J5	SANT domain-containing protein.	Uncharacterized protein.	0.951
CNBG_0503	CNBG_3244	A0A095C130	A0A095D8K8	SANT domain-containing protein.	Histone deacetylase 1/2.	0.870
CNBG_0503	CNBG_3873	A0A095C130	A0A095DBL5	SANT domain-containing protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.847
CNBG_0503	CNBG_4309	A0A095C130	A0A095DC49	SANT domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.886
CNBG_0503	CNBG_5891	A0A095C130	A0A095ET38	SANT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.986
CNBG_0503	CNBG_6068	A0A095C130	A0A095CIS2	SANT domain-containing protein.	Uncharacterized protein.	0.888
CNBG_0917	CNBG_0361	A0A095C5X0	A0A095EAF3	Uncharacterized protein.	Uncharacterized protein.	0.640

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About