(31 nodes) RNA Polymerase II Promoter Escape network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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Your Input:
	CNBG_0233	Uncharacterized protein. (371 aa)
	CNBG_1348	DNA excision repair protein ERCC-2. (799 aa)
	CNBG_1760	Transcription initiation factor TFIIB. (376 aa)
	CNBG_2063	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (126 aa)
	CNBG_2323	Transcription initiation factor TFIID subunit 2. (1729 aa)
	CNBG_2405	TFIID_20kDa domain-containing protein. (501 aa)
	CNBG_2668	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (438 aa)
	CNBG_2645	Cyclin H; Belongs to the cyclin family. (447 aa)
	CNBG_3098	Nitroreductase. (210 aa)
	CNBG_3427	Transcription initiation factor TFIID subunit 11. (173 aa)
	CNBG_3572	Transcription initiation factor TFIID subunit 1. (1070 aa)
	CNBG_3657	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (765 aa)
	CNBG_4415	TATA-box-binding protein. (232 aa)
	CNBG_4745	Transcription initiation factor TFIIH subunit 3. (370 aa)
	CNBG_4231	Transcription initiation factor TFIID subunit 6. (522 aa)
	CNBG_5078	Transcription initiation factor TFIIA large subunit. (210 aa)
	CNBG_5015	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (358 aa)
	CNBG_4427	Transcription initiation factor TFIID subunit 5. (696 aa)
	CNBG_5448	Chromosome transmission fidelity protein 1. (889 aa)
	CNBG_4587	Transcription initiation factor TFIIF subunit beta. (334 aa)
	CNBG_5697	Transcription initiation factor TFIIE subunit beta. (295 aa)
	CNBG_1314	DNA excision repair protein ERCC-3. (866 aa)
	CNBG_2974	Transcription initiation factor TFIID subunit 10. (303 aa)
	CNBG_3169	DUF4211 domain-containing protein. (409 aa)
	CNBG_3349	Transcription initiation factor TFIIH subunit 1. (641 aa)
	CNBG_3424	Transcription initiation factor TFIIE subunit alpha. (416 aa)
	CNBG_5064	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (442 aa)
	CNBG_5974	Uncharacterized protein. (268 aa)
	CNBG_9119	Transcription initiation factor TFIID subunit 7. (744 aa)
	CNBG_9165	CDK-activating kinase assembly factor MAT1. (373 aa)
	CNBG_9115	TFIIH basal transcription factor complex TTD-A subunit. (78 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0233	CNBG_1314	A0A095C063	A0A095D221	Uncharacterized protein.	DNA excision repair protein ERCC-3.	0.817
CNBG_0233	CNBG_1348	A0A095C063	A0A095C3Q1	Uncharacterized protein.	DNA excision repair protein ERCC-2.	0.859
CNBG_0233	CNBG_1760	A0A095C063	A0A095C5R5	Uncharacterized protein.	Transcription initiation factor TFIIB.	0.922
CNBG_0233	CNBG_2063	A0A095C063	A0A095C637	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.863
CNBG_0233	CNBG_2323	A0A095C063	A0A095C706	Uncharacterized protein.	Transcription initiation factor TFIID subunit 2.	0.998
CNBG_0233	CNBG_2405	A0A095C063	A0A095C7U3	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.955
CNBG_0233	CNBG_2645	A0A095C063	A0A095C8I7	Uncharacterized protein.	Cyclin H; Belongs to the cyclin family.	0.857
CNBG_0233	CNBG_2668	A0A095C063	A0A095C815	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.827
CNBG_0233	CNBG_2974	A0A095C063	A0A095D7U0	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10.	0.998
CNBG_0233	CNBG_3098	A0A095C063	A0A095C9G8	Uncharacterized protein.	Nitroreductase.	0.716
CNBG_0233	CNBG_3169	A0A095C063	A0A095D8C9	Uncharacterized protein.	DUF4211 domain-containing protein.	0.998
CNBG_0233	CNBG_3349	A0A095C063	A0A095D8Z9	Uncharacterized protein.	Transcription initiation factor TFIIH subunit 1.	0.860
CNBG_0233	CNBG_3424	A0A095C063	A0A095D9C8	Uncharacterized protein.	Transcription initiation factor TFIIE subunit alpha.	0.854
CNBG_0233	CNBG_3427	A0A095C063	A0A095CDN6	Uncharacterized protein.	Transcription initiation factor TFIID subunit 11.	0.999
CNBG_0233	CNBG_3572	A0A095C063	A0A095CE17	Uncharacterized protein.	Transcription initiation factor TFIID subunit 1.	0.998
CNBG_0233	CNBG_3657	A0A095C063	A0A095CEA5	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.918
CNBG_0233	CNBG_4231	A0A095C063	A0A095CFE1	Uncharacterized protein.	Transcription initiation factor TFIID subunit 6.	0.998
CNBG_0233	CNBG_4415	A0A095C063	A0A095CEE3	Uncharacterized protein.	TATA-box-binding protein.	0.933
CNBG_0233	CNBG_4427	A0A095C063	A0A095CGU1	Uncharacterized protein.	Transcription initiation factor TFIID subunit 5.	0.995
CNBG_0233	CNBG_4587	A0A095C063	A0A095CH73	Uncharacterized protein.	Transcription initiation factor TFIIF subunit beta.	0.860

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