STRINGSTRING
CNBG_1348 CNBG_1348 CNBG_2668 CNBG_2668 CNBG_2645 CNBG_2645 CNBG_4745 CNBG_4745 CNBG_5015 CNBG_5015 CNBG_5697 CNBG_5697 CNBG_3349 CNBG_3349 CNBG_3424 CNBG_3424 CNBG_5064 CNBG_5064 CNBG_9165 CNBG_9165 CNBG_9115 CNBG_9115
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CNBG_1348DNA excision repair protein ERCC-2. (799 aa)
CNBG_2668General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (438 aa)
CNBG_2645Cyclin H; Belongs to the cyclin family. (447 aa)
CNBG_4745Transcription initiation factor TFIIH subunit 3. (370 aa)
CNBG_5015CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (358 aa)
CNBG_5697Transcription initiation factor TFIIE subunit beta. (295 aa)
CNBG_3349Transcription initiation factor TFIIH subunit 1. (641 aa)
CNBG_3424Transcription initiation factor TFIIE subunit alpha. (416 aa)
CNBG_5064RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (442 aa)
CNBG_9165CDK-activating kinase assembly factor MAT1. (373 aa)
CNBG_9115TFIIH basal transcription factor complex TTD-A subunit. (78 aa)
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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