STRINGSTRING
CNBG_0418 CNBG_0418 CNBG_0473 CNBG_0473 CNBG_0673 CNBG_0673 CNBG_0768 CNBG_0768 LSM5 LSM5 LSM8 LSM8 CNBG_0352 CNBG_0352 CNBG_0442 CNBG_0442 CNBG_1858 CNBG_1858 CNBG_1973 CNBG_1973 CNBG_1830 CNBG_1830 CNBG_2045 CNBG_2045 CNBG_1447 CNBG_1447 CNBG_1532 CNBG_1532 CNBG_2618 CNBG_2618 CNBG_2888 CNBG_2888 CNBG_3373 CNBG_3373 CNBG_2662 CNBG_2662 CNBG_3887 CNBG_3887 CNBG_4530 CNBG_4530 CNBG_4700 CNBG_4700 CNBG_5658 CNBG_5658 CNBG_5673 CNBG_5673 CNBG_6098 CNBG_6098 CNBG_5152 CNBG_5152 CNBG_5930 CNBG_5930 CNBG_5427 CNBG_5427 CNBG_6192 CNBG_6192 CNBG_1244 CNBG_1244 CNBG_1624 CNBG_1624 CNBG_2329 CNBG_2329 CNBG_2574 CNBG_2574 CNBG_3334 CNBG_3334 CNBG_5837 CNBG_5837 CNBG_0101 CNBG_0101 CNBG_0411 CNBG_0411 CNBG_0661 CNBG_0661 CNBG_3780 CNBG_3780 CNBG_5411 CNBG_5411 CNBG_9292 CNBG_9292 CNBG_9293 CNBG_9293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CNBG_0418U1 small nuclear ribonucleoprotein 70kDa. (429 aa)
CNBG_0473Pre-mRNA-processing factor 6. (946 aa)
CNBG_0673Splicing factor 3A subunit 2. (218 aa)
CNBG_0768Small nuclear ribonucleoprotein F. (87 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (122 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
CNBG_0352Uncharacterized protein. (354 aa)
CNBG_0442Splicing factor 3A subunit 1. (761 aa)
CNBG_1858Pre-mRNA-splicing factor ini1. (116 aa)
CNBG_1973Pre-mRNA-splicing helicase BRR2. (2153 aa)
CNBG_1830Uncharacterized protein. (164 aa)
CNBG_2045Prp8 binding protein. (374 aa)
CNBG_1447Pre-mRNA-splicing factor RSE1. (1217 aa)
CNBG_1532Small nuclear ribonucleoprotein Sm D2. (111 aa)
CNBG_2618Splicing factor 3B subunit 1. (1154 aa)
CNBG_2888Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
CNBG_3373Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
CNBG_2662Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (142 aa)
CNBG_3887Splicing factor 3A subunit 3. (512 aa)
CNBG_4530Splicing factor 3B subunit 4. (308 aa)
CNBG_4700Pre-mRNA branch site protein p14. (120 aa)
CNBG_5658Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (179 aa)
CNBG_5673Small nuclear ribonucleoprotein B and B. (197 aa)
CNBG_6098RRM domain-containing protein. (261 aa)
CNBG_5152RNA binding protein. (282 aa)
CNBG_5930U4/U6 small nuclear ribonucleoprotein PRP4. (511 aa)
CNBG_5427Small nuclear ribonucleoprotein Sm D3. (124 aa)
CNBG_6192Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
CNBG_1244Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (738 aa)
CNBG_1624U2 small nuclear ribonucleoprotein A. (253 aa)
CNBG_2329Splicing factor 3B subunit 2. (574 aa)
CNBG_2574U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (214 aa)
CNBG_3334U4/U6 small nuclear ribonucleoprotein PRP3. (354 aa)
CNBG_5837Small nuclear ribonucleoprotein G. (78 aa)
CNBG_0101Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (1068 aa)
CNBG_0411Pre-mRNA-processing-splicing factor 8. (2465 aa)
CNBG_0661U5 small nuclear ribonucleoprotein component. (995 aa)
CNBG_3780U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
CNBG_5411U4/U6 small nuclear ribonucleoprotein PRP31. (553 aa)
CNBG_9292Uncharacterized protein. (182 aa)
CNBG_9293U4/U6.U5 tri-snRNP-associated protein 1. (500 aa)
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.