STRINGSTRING
CNBG_0418 CNBG_0418 CNBG_0768 CNBG_0768 CNBG_2888 CNBG_2888 CNBG_5673 CNBG_5673 CNBG_6098 CNBG_6098 CNBG_5152 CNBG_5152 CNBG_5427 CNBG_5427 CNBG_6192 CNBG_6192 CNBG_2574 CNBG_2574 CNBG_5837 CNBG_5837
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CNBG_0418U1 small nuclear ribonucleoprotein 70kDa. (429 aa)
CNBG_0768Small nuclear ribonucleoprotein F. (87 aa)
CNBG_2888Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
CNBG_5673Small nuclear ribonucleoprotein B and B. (197 aa)
CNBG_6098RRM domain-containing protein. (261 aa)
CNBG_5152RNA binding protein. (282 aa)
CNBG_5427Small nuclear ribonucleoprotein Sm D3. (124 aa)
CNBG_6192Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
CNBG_2574U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (214 aa)
CNBG_5837Small nuclear ribonucleoprotein G. (78 aa)
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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