(31 nodes) Positive regulation of gene expression network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNBG_5941	Eukaryotic translation initiation factor 5A. (158 aa)
	CNBG_0283	Uncharacterized protein. (543 aa)
	CNBG_0598	Histone-lysine N-methyltransferase Su(Var)3-9. (473 aa)
	CNBG_0828	Transcription factor binding protein. (1074 aa)
	CNBG_0337	Cytoplasmic protein. (474 aa)
	CNBG_0637	RRM domain-containing protein. (254 aa)
	CNBG_1505	Transformer-2-beta isoform 3. (277 aa)
	CNBG_2320	Smg4_UPF3 domain-containing protein. (434 aa)
	CNBG_4042	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	CNBG_4077	SAP domain-containing protein. (512 aa)
	CNBG_4049	Cellular nucleic acid-binding protein. (210 aa)
	CNBG_3844	Uncharacterized protein. (348 aa)
	CNBG_5003	Uncharacterized protein. (790 aa)
	CNBG_4312	Uncharacterized protein. (1049 aa)
	CNBG_5430	3'-5' exonuclease domain-containing protein. (561 aa)
	CNBG_0924	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	CNBG_1544	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (565 aa)
	CNBG_1909	Uncharacterized protein. (1009 aa)
	CNBG_2044	JmjC domain-containing protein. (390 aa)
	CNBG_3604	Uncharacterized protein. (365 aa)
	CNBG_4674	Uncharacterized protein. (732 aa)
	CNBG_5484	Nam9 protein. (317 aa)
	CNBG_0311	Transformer-2 protein. (275 aa)
	CNBG_0841	Cellular nucleic acid-binding protein. (162 aa)
	CNBG_5851	DNA-directed RNA polymerase II subunit RPB4. (153 aa)
	CNBG_9593	Uncharacterized protein. (1316 aa)
	GUF1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (579 aa)
	CNBG_3770	Uncharacterized protein. (137 aa)
	CNBG_2286	YTH domain family 2. (777 aa)
	CNBG_1176	ATP-binding cassette, sub-family E, member 1. (603 aa)
	CNBG_0911	Co-chaperone. (522 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0311	CNBG_0598	A0A095EA88	A0A095C1C2	Transformer-2 protein.	Histone-lysine N-methyltransferase Su(Var)3-9.	0.744
CNBG_0311	CNBG_0637	A0A095EA88	A0A095C4S2	Transformer-2 protein.	RRM domain-containing protein.	0.659
CNBG_0311	CNBG_0924	A0A095EA88	A0A095D0X3	Transformer-2 protein.	DNA-directed RNA polymerase II subunit RPB7.	0.701
CNBG_0311	CNBG_2320	A0A095EA88	A0A095C7I1	Transformer-2 protein.	Smg4_UPF3 domain-containing protein.	0.547
CNBG_0311	CNBG_5003	A0A095EA88	A0A095CFL0	Transformer-2 protein.	Uncharacterized protein.	0.597
CNBG_0598	CNBG_0311	A0A095C1C2	A0A095EA88	Histone-lysine N-methyltransferase Su(Var)3-9.	Transformer-2 protein.	0.744
CNBG_0598	CNBG_0637	A0A095C1C2	A0A095C4S2	Histone-lysine N-methyltransferase Su(Var)3-9.	RRM domain-containing protein.	0.744
CNBG_0598	CNBG_1176	A0A095C1C2	A0A095ECY7	Histone-lysine N-methyltransferase Su(Var)3-9.	ATP-binding cassette, sub-family E, member 1.	0.920
CNBG_0598	CNBG_1505	A0A095C1C2	A0A095C523	Histone-lysine N-methyltransferase Su(Var)3-9.	Transformer-2-beta isoform 3.	0.744
CNBG_0598	CNBG_4042	A0A095C1C2	A0A095CBQ3	Histone-lysine N-methyltransferase Su(Var)3-9.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.977
CNBG_0598	CNBG_5484	A0A095C1C2	A0A095DG25	Histone-lysine N-methyltransferase Su(Var)3-9.	Nam9 protein.	0.965
CNBG_0598	CNBG_5941	A0A095C1C2	A0A095ETQ0	Histone-lysine N-methyltransferase Su(Var)3-9.	Eukaryotic translation initiation factor 5A.	0.793
CNBG_0637	CNBG_0311	A0A095C4S2	A0A095EA88	RRM domain-containing protein.	Transformer-2 protein.	0.659
CNBG_0637	CNBG_0598	A0A095C4S2	A0A095C1C2	RRM domain-containing protein.	Histone-lysine N-methyltransferase Su(Var)3-9.	0.744
CNBG_0637	CNBG_0924	A0A095C4S2	A0A095D0X3	RRM domain-containing protein.	DNA-directed RNA polymerase II subunit RPB7.	0.701
CNBG_0637	CNBG_1505	A0A095C4S2	A0A095C523	RRM domain-containing protein.	Transformer-2-beta isoform 3.	0.658
CNBG_0637	CNBG_2320	A0A095C4S2	A0A095C7I1	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.547
CNBG_0637	CNBG_5003	A0A095C4S2	A0A095CFL0	RRM domain-containing protein.	Uncharacterized protein.	0.597
CNBG_0828	CNBG_1544	A0A095C222	A0A095D2V7	Transcription factor binding protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.774
CNBG_0924	CNBG_0311	A0A095D0X3	A0A095EA88	DNA-directed RNA polymerase II subunit RPB7.	Transformer-2 protein.	0.701

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