(21 nodes) snoRNA binding network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Others

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protein homology

Your Input:
	CNBG_1156	U3 small nucleolar RNA-associated protein 15. (523 aa)
	CNBG_0048	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17). (1077 aa)
	CNBG_0825	Essential nuclear protein 1. (422 aa)
	CNBG_1588	Nucleolar protein 58. (566 aa)
	CNBG_2683	U3 small nucleolar RNA-associated protein 10. (2001 aa)
	CNBG_4039	Pre-rRNA-processing protein TSR1. (807 aa)
	CNBG_4139	rRNA biogenesis protein RRP5. (1486 aa)
	CNBG_4151	U3 small nucleolar ribonucleoprotein IMP4. (288 aa)
	CNBG_5433	U3 small nucleolar RNA-associated protein 6. (447 aa)
	CNBG_5638	Ribosomal RNA-processing protein 9. (546 aa)
	CNBG_2789	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (159 aa)
	CNBG_4589	U3 small nucleolar RNA-associated protein 12. (988 aa)
	CNBG_5349	Nucleolar protein 56. (571 aa)
	CNBG_0626	H/ACA ribonucleoprotein complex subunit 3. (103 aa)
	CNBG_1076	U3 small nucleolar ribonucleoprotein IMP3. (182 aa)
	CNBG_2141	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (715 aa)
	CNBG_3256	Ribosome biogenesis protein BMS1. (1139 aa)
	CNBG_4085	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (225 aa)
	CNBG_9107	ATP-dependent RNA helicase DBP4; Belongs to the DEAD box helicase family. (851 aa)
	CNBG_9383	U3 small nucleolar RNA-associated protein 13. (903 aa)
	CNBG_9142	Nucleolar protein 14. (932 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0048	CNBG_0825	A0A095BZK4	A0A095C2Y5	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Essential nuclear protein 1.	0.990
CNBG_0048	CNBG_1076	A0A095BZK4	A0A095ECM3	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar ribonucleoprotein IMP3.	0.993
CNBG_0048	CNBG_1156	A0A095BZK4	A0A095ECW3	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 15.	0.999
CNBG_0048	CNBG_1588	A0A095BZK4	A0A095C4K0	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Nucleolar protein 58.	0.999
CNBG_0048	CNBG_2141	A0A095BZK4	A0A095EFY7	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.871
CNBG_0048	CNBG_2683	A0A095BZK4	A0A095C834	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 10.	0.999
CNBG_0048	CNBG_2789	A0A095BZK4	A0A095D740	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.523
CNBG_0048	CNBG_3256	A0A095BZK4	A0A095EJM0	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Ribosome biogenesis protein BMS1.	0.999
CNBG_0048	CNBG_4039	A0A095BZK4	A0A095CC81	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Pre-rRNA-processing protein TSR1.	0.881
CNBG_0048	CNBG_4085	A0A095BZK4	A0A095ELK1	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.922
CNBG_0048	CNBG_4139	A0A095BZK4	A0A095CCN5	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	rRNA biogenesis protein RRP5.	0.999
CNBG_0048	CNBG_4151	A0A095BZK4	A0A095CF58	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar ribonucleoprotein IMP4.	0.994
CNBG_0048	CNBG_4589	A0A095BZK4	A0A095DD16	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 12.	0.997
CNBG_0048	CNBG_5349	A0A095BZK4	A0A095DFI5	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Nucleolar protein 56.	0.994
CNBG_0048	CNBG_5433	A0A095BZK4	A0A095CGX3	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 6.	0.999
CNBG_0048	CNBG_5638	A0A095BZK4	A0A095CHF5	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Ribosomal RNA-processing protein 9.	0.998
CNBG_0048	CNBG_9107	A0A095BZK4	A0A0L6DHI0	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	ATP-dependent RNA helicase DBP4; Belongs to the DEAD box helicase family.	0.832
CNBG_0048	CNBG_9142	A0A095BZK4	A0A0L6DJ42	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	Nucleolar protein 14.	0.998
CNBG_0048	CNBG_9383	A0A095BZK4	A0A0L6DIK4	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	U3 small nucleolar RNA-associated protein 13.	0.996
CNBG_0626	CNBG_1076	A0A095EB64	A0A095ECM3	H/ACA ribonucleoprotein complex subunit 3.	U3 small nucleolar ribonucleoprotein IMP3.	0.550

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