(39 nodes) Small-subunit processome network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNBG_4589	U3 small nucleolar RNA-associated protein 12. (988 aa)
	CNBG_2006	U3 small nucleolar RNA-associated protein 19. (420 aa)
	CNBG_4301	U3 small nucleolar RNA-associated protein 20. (2586 aa)
	CNBG_4746	Uncharacterized protein. (582 aa)
	CNBG_5306	U3 small nucleolar RNA-associated protein 24. (181 aa)
	CNBG_9107	ATP-dependent RNA helicase DBP4; Belongs to the DEAD box helicase family. (851 aa)
	CNBG_9383	U3 small nucleolar RNA-associated protein 13. (903 aa)
	CNBG_0008	U3 small nucleolar RNA-associated protein 5. (709 aa)
	CNBG_9142	Nucleolar protein 14. (932 aa)
	CNBG_5638	Ribosomal RNA-processing protein 9. (546 aa)
	CNBG_1156	U3 small nucleolar RNA-associated protein 15. (523 aa)
	CNBG_1076	U3 small nucleolar ribonucleoprotein IMP3. (182 aa)
	CNBG_6129	U3 small nucleolar RNA-associated protein 7. (624 aa)
	CNBG_5433	U3 small nucleolar RNA-associated protein 6. (447 aa)
	CNBG_5418	Ribosome biogenesis protein ENP2. (771 aa)
	CNBG_4151	U3 small nucleolar ribonucleoprotein IMP4. (288 aa)
	CNBG_4748	U3 small nucleolar RNA-associated protein 23. (293 aa)
	CNBG_4543	U3 small nucleolar RNA-associated protein 11. (316 aa)
	CNBG_4139	rRNA biogenesis protein RRP5. (1486 aa)
	CNBG_2617	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (199 aa)
	CNBG_3268	ATP-dependent RNA helicase DHX37/DHR1. (1287 aa)
	CNBG_2895	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (484 aa)
	CNBG_2683	U3 small nucleolar RNA-associated protein 10. (2001 aa)
	CNBG_2458	Periodic tryptophan protein 2. (884 aa)
	CNBG_2173	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	CNBG_1588	Nucleolar protein 58. (566 aa)
	CNBG_1315	WD repeat and SOF domain-containing protein 1. (457 aa)
	CNBG_0048	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17). (1077 aa)
	CNBG_5404	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (776 aa)
	CNBG_5349	Nucleolar protein 56. (571 aa)
	CNBG_5089	U3 small nucleolar RNA-associated protein 3. (715 aa)
	CNBG_5758	U3 small nucleolar ribonucleoprotein LCP5. (382 aa)
	CNBG_6203	U3 small nucleolar RNA-associated protein 14. (952 aa)
	CNBG_5932	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (403 aa)
	CNBG_6177	U3 small nucleolar RNA-associated protein 18. (624 aa)
	CNBG_0714	U3 small nucleolar RNA-associated protein 22. (1237 aa)
	CNBG_0729	U3 small nucleolar RNA-associated protein 21. (597 aa)
	CNBG_1959	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (256 aa)
	CNBG_3738	rRNA 2'-O-methyltransferase fibrillarin. (314 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0008	CNBG_0048	A0A095BZG5	A0A095BZK4	U3 small nucleolar RNA-associated protein 5.	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17).	0.999
CNBG_0008	CNBG_0714	A0A095BZG5	A0A095D039	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 22.	0.998
CNBG_0008	CNBG_0729	A0A095BZG5	A0A095D057	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 21.	0.999
CNBG_0008	CNBG_1076	A0A095BZG5	A0A095ECM3	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar ribonucleoprotein IMP3.	0.996
CNBG_0008	CNBG_1156	A0A095BZG5	A0A095ECW3	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 15.	0.999
CNBG_0008	CNBG_1315	A0A095BZG5	A0A095C4G4	U3 small nucleolar RNA-associated protein 5.	WD repeat and SOF domain-containing protein 1.	0.996
CNBG_0008	CNBG_1588	A0A095BZG5	A0A095C4K0	U3 small nucleolar RNA-associated protein 5.	Nucleolar protein 58.	0.999
CNBG_0008	CNBG_1959	A0A095BZG5	A0A095D4D7	U3 small nucleolar RNA-associated protein 5.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.721
CNBG_0008	CNBG_2006	A0A095BZG5	A0A095EFK7	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 19.	0.997
CNBG_0008	CNBG_2173	A0A095BZG5	A0A095C6E2	U3 small nucleolar RNA-associated protein 5.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.988
CNBG_0008	CNBG_2458	A0A095BZG5	A0A095C7H2	U3 small nucleolar RNA-associated protein 5.	Periodic tryptophan protein 2.	0.999
CNBG_0008	CNBG_2617	A0A095BZG5	A0A095CAZ7	U3 small nucleolar RNA-associated protein 5.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.978
CNBG_0008	CNBG_2683	A0A095BZG5	A0A095C834	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 10.	0.999
CNBG_0008	CNBG_2895	A0A095BZG5	A0A095C9B7	U3 small nucleolar RNA-associated protein 5.	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.	0.884
CNBG_0008	CNBG_3268	A0A095BZG5	A0A095CA12	U3 small nucleolar RNA-associated protein 5.	ATP-dependent RNA helicase DHX37/DHR1.	0.943
CNBG_0008	CNBG_3738	A0A095BZG5	A0A095DB85	U3 small nucleolar RNA-associated protein 5.	rRNA 2'-O-methyltransferase fibrillarin.	0.996
CNBG_0008	CNBG_4139	A0A095BZG5	A0A095CCN5	U3 small nucleolar RNA-associated protein 5.	rRNA biogenesis protein RRP5.	0.988
CNBG_0008	CNBG_4151	A0A095BZG5	A0A095CF58	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar ribonucleoprotein IMP4.	0.995
CNBG_0008	CNBG_4301	A0A095BZG5	A0A095EN35	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 20.	0.993
CNBG_0008	CNBG_4543	A0A095BZG5	A0A095CE26	U3 small nucleolar RNA-associated protein 5.	U3 small nucleolar RNA-associated protein 11.	0.991

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