STRINGSTRING
CNBG_4396 CNBG_4396 CNBG_5851 CNBG_5851 CNBG_3464 CNBG_3464 CNBG_1719 CNBG_1719 CNBG_0924 CNBG_0924 CNBG_0709 CNBG_0709 CNBG_5957 CNBG_5957 CNBG_5467 CNBG_5467 CNBG_5985 CNBG_5985 CNBG_6143 CNBG_6143 CNBG_0283 CNBG_0283 CNBG_0465 CNBG_0465 CNBG_1090 CNBG_1090 CNBG_1265 CNBG_1265 CNBG_1733 CNBG_1733 CNBG_0937 CNBG_0937 CNBG_1930 CNBG_1930 CNBG_2395 CNBG_2395 CNBG_2430 CNBG_2430 CNBG_3238 CNBG_3238 CNBG_3350 CNBG_3350 CNBG_3757 CNBG_3757 CNBG_4668 CNBG_4668 CNBG_4525 CNBG_4525 CNBG_4813 CNBG_4813 CNBG_5003 CNBG_5003 CNBG_4312 CNBG_4312 CNBG_5478 CNBG_5478 LSM1 LSM1 PAN2 PAN2 CNBG_5097 CNBG_5097 CNBG_5679 CNBG_5679 PAN3 PAN3 CNBG_2286 CNBG_2286 CNBG_3431 CNBG_3431 CNBG_3750 CNBG_3750 CNBG_3579 CNBG_3579
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CNBG_4396Guanine nucleotide-binding protein subunit beta-like protein. (314 aa)
CNBG_5851DNA-directed RNA polymerase II subunit RPB4. (153 aa)
CNBG_3464Pumilio-family RNA binding protein. (954 aa)
CNBG_1719Translation elongation factor Tu. (754 aa)
CNBG_0924DNA-directed RNA polymerase II subunit RPB7. (172 aa)
CNBG_0709Exosome complex component RRP40. (247 aa)
CNBG_5957Nucleolysin TIA-1/TIAR. (434 aa)
CNBG_5467Pumilio 2. (626 aa)
CNBG_5985RNase_PH domain-containing protein. (299 aa)
CNBG_6143Cell wall integrity protein scw1. (961 aa)
CNBG_0283Uncharacterized protein. (543 aa)
CNBG_0465Exosome complex component RRP4. (331 aa)
CNBG_1090Exosome complex component RRP43. (321 aa)
CNBG_1265DNA topoisomerase 2-associated protein PAT1. (838 aa)
CNBG_1733RNase_PH domain-containing protein. (332 aa)
CNBG_0937Uncharacterized protein. (520 aa)
CNBG_1930CCR4-NOT transcription complex subunit 3. (755 aa)
CNBG_2395Glucose-repressible alcohol dehydrogenase transcriptional effector. (745 aa)
CNBG_2430Uncharacterized protein. (211 aa)
CNBG_3238Exosome complex component RRP45. (196 aa)
CNBG_3350Uncharacterized protein. (310 aa)
CNBG_3757Cytoplasmic protein. (647 aa)
CNBG_4668RNP domain-containing protein. (560 aa)
CNBG_4525CCR4-NOT transcription complex subunit 7/8. (293 aa)
CNBG_4813RNA binding protein. (684 aa)
CNBG_5003Uncharacterized protein. (790 aa)
CNBG_4312Uncharacterized protein. (1049 aa)
CNBG_5478GTP-binding protein 1. (619 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (135 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1181 aa)
CNBG_5097Scavenger mRNA-decapping enzyme DcpS. (270 aa)
CNBG_5679Uncharacterized protein. (553 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (670 aa)
CNBG_2286YTH domain family 2. (777 aa)
CNBG_3431Exosome complex exonuclease RRP6. (954 aa)
CNBG_3750mRNA-decapping enzyme subunit 2. (822 aa)
CNBG_3579CCR4-NOT transcription complex subunit 1. (2265 aa)
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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