(14 nodes) Preribosome, small subunit precursor network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNBG_3232	Uncharacterized protein. (292 aa)
	CNBG_4039	Pre-rRNA-processing protein TSR1. (807 aa)
	CNBG_2297	Protein LTV1. (373 aa)
	CNBG_2243	Uncharacterized protein. (549 aa)
	CNBG_0825	Essential nuclear protein 1. (422 aa)
	CNBG_3292	Uncharacterized protein. (477 aa)
	CNBG_5005	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (621 aa)
	CNBG_5047	rRNA-processing protein EFG1. (287 aa)
	CNBG_2299	Ribosomal RNA-processing protein 1. (353 aa)
	CNBG_3589	Nucleolar protein 15. (439 aa)
	CNBG_1461	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (493 aa)
	CNBG_2006	U3 small nucleolar RNA-associated protein 19. (420 aa)
	CNBG_4301	U3 small nucleolar RNA-associated protein 20. (2586 aa)
	CNBG_9142	Nucleolar protein 14. (932 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0825	CNBG_1461	A0A095C2Y5	A0A095EDW3	Essential nuclear protein 1.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
CNBG_0825	CNBG_2006	A0A095C2Y5	A0A095EFK7	Essential nuclear protein 1.	U3 small nucleolar RNA-associated protein 19.	0.998
CNBG_0825	CNBG_2297	A0A095C2Y5	A0A095C9Y8	Essential nuclear protein 1.	Protein LTV1.	0.999
CNBG_0825	CNBG_2299	A0A095C2Y5	A0A095D5H6	Essential nuclear protein 1.	Ribosomal RNA-processing protein 1.	0.842
CNBG_0825	CNBG_3232	A0A095C2Y5	A0A095CCX5	Essential nuclear protein 1.	Uncharacterized protein.	0.995
CNBG_0825	CNBG_3292	A0A095C2Y5	A0A095CD51	Essential nuclear protein 1.	Uncharacterized protein.	0.931
CNBG_0825	CNBG_3589	A0A095C2Y5	A0A095D9S5	Essential nuclear protein 1.	Nucleolar protein 15.	0.874
CNBG_0825	CNBG_4039	A0A095C2Y5	A0A095CC81	Essential nuclear protein 1.	Pre-rRNA-processing protein TSR1.	0.999
CNBG_0825	CNBG_4301	A0A095C2Y5	A0A095EN35	Essential nuclear protein 1.	U3 small nucleolar RNA-associated protein 20.	0.993
CNBG_0825	CNBG_5005	A0A095C2Y5	A0A095CG47	Essential nuclear protein 1.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.900
CNBG_0825	CNBG_5047	A0A095C2Y5	A0A095CIL2	Essential nuclear protein 1.	rRNA-processing protein EFG1.	0.452
CNBG_0825	CNBG_9142	A0A095C2Y5	A0A0L6DJ42	Essential nuclear protein 1.	Nucleolar protein 14.	0.998
CNBG_1461	CNBG_0825	A0A095EDW3	A0A095C2Y5	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Essential nuclear protein 1.	0.999
CNBG_1461	CNBG_2006	A0A095EDW3	A0A095EFK7	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	U3 small nucleolar RNA-associated protein 19.	0.895
CNBG_1461	CNBG_2297	A0A095EDW3	A0A095C9Y8	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Protein LTV1.	0.999
CNBG_1461	CNBG_2299	A0A095EDW3	A0A095D5H6	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Ribosomal RNA-processing protein 1.	0.801
CNBG_1461	CNBG_3232	A0A095EDW3	A0A095CCX5	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Uncharacterized protein.	0.999
CNBG_1461	CNBG_3292	A0A095EDW3	A0A095CD51	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Uncharacterized protein.	0.711
CNBG_1461	CNBG_3589	A0A095EDW3	A0A095D9S5	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Nucleolar protein 15.	0.831
CNBG_1461	CNBG_4039	A0A095EDW3	A0A095CC81	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	Pre-rRNA-processing protein TSR1.	0.999

page 1 of 7

Server load: medium (44%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About