(31 nodes) RNA Polymerase I Transcription network (Cryptococcus gattii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

Your Input:
	CNBG_5064	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (442 aa)
	CNBG_0038	DNA-directed RNA polymerase I subunit RPA49. (427 aa)
	CNBG_0225	Ubiquitin-40S ribosomal protein S27a. (129 aa)
	CNBG_0760	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1726 aa)
	CNBG_1348	DNA excision repair protein ERCC-2. (799 aa)
	CNBG_1953	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1192 aa)
	CNBG_2668	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (438 aa)
	CNBG_2645	Cyclin H; Belongs to the cyclin family. (447 aa)
	CNBG_2077	SprT-like domain-containing protein. (637 aa)
	CNBG_3335	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	CNBG_4415	TATA-box-binding protein. (232 aa)
	CNBG_4745	Transcription initiation factor TFIIH subunit 3. (370 aa)
	CNBG_5015	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (358 aa)
	CNBG_6115	DNA-directed RNA polymerase I, II, and III subunit rpabc5. (69 aa)
	CNBG_6127	Histone H2B; Belongs to the histone H2B family. (139 aa)
	CNBG_0029	Uncharacterized protein. (308 aa)
	CNBG_0749	DNA-directed RNA polymerase I and III subunit RPAC1. (350 aa)
	CNBG_0864	Uncharacterized protein. (434 aa)
	CNBG_1314	DNA excision repair protein ERCC-3. (866 aa)
	CNBG_2764	DNA-directed RNA polymerase I, II, and III subunit RPABC3. (163 aa)
	CNBG_2794	BTB domain-containing protein. (486 aa)
	CNBG_3349	Transcription initiation factor TFIIH subunit 1. (641 aa)
	CNBG_1141	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (210 aa)
	CNBG_2681	DNA-directed RNA polymerase I, II, and III subunit RPABC2. (149 aa)
	CNBG_3141	DNA-directed RNA polymerase I subunit RPA43. (359 aa)
	CNBG_3381	Uncharacterized protein. (718 aa)
	CNBG_5156	Nucleolar protein. (591 aa)
	CNBG_9165	CDK-activating kinase assembly factor MAT1. (373 aa)
	CNBG_9069	Pol II transcription elongation factor. (893 aa)
	CNBG_9246	Uncharacterized protein. (103 aa)
	CNBG_9115	TFIIH basal transcription factor complex TTD-A subunit. (78 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0029	CNBG_0038	A0A095CXV6	A0A095BZJ3	Uncharacterized protein.	DNA-directed RNA polymerase I subunit RPA49.	0.785
CNBG_0029	CNBG_0749	A0A095CXV6	A0A095D083	Uncharacterized protein.	DNA-directed RNA polymerase I and III subunit RPAC1.	0.783
CNBG_0029	CNBG_0760	A0A095CXV6	A0A095C2Q2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.783
CNBG_0029	CNBG_0864	A0A095CXV6	A0A095D0M2	Uncharacterized protein.	Uncharacterized protein.	0.841
CNBG_0029	CNBG_1141	A0A095CXV6	A0A095ECU8	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC1.	0.810
CNBG_0029	CNBG_1314	A0A095CXV6	A0A095D221	Uncharacterized protein.	DNA excision repair protein ERCC-3.	0.637
CNBG_0029	CNBG_1953	A0A095CXV6	A0A095C5U9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.802
CNBG_0029	CNBG_2681	A0A095CXV6	A0A095EHP4	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC2.	0.839
CNBG_0029	CNBG_2764	A0A095CXV6	A0A095D713	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC3.	0.780
CNBG_0029	CNBG_2794	A0A095CXV6	A0A095D747	Uncharacterized protein.	BTB domain-containing protein.	0.725
CNBG_0029	CNBG_3141	A0A095CXV6	A0A095EJ74	Uncharacterized protein.	DNA-directed RNA polymerase I subunit RPA43.	0.752
CNBG_0029	CNBG_3335	A0A095CXV6	A0A095CAS3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.772
CNBG_0029	CNBG_3381	A0A095CXV6	A0A095EK45	Uncharacterized protein.	Uncharacterized protein.	0.872
CNBG_0029	CNBG_4415	A0A095CXV6	A0A095CEE3	Uncharacterized protein.	TATA-box-binding protein.	0.909
CNBG_0029	CNBG_6115	A0A095CXV6	A0A095CJD3	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit rpabc5.	0.835
CNBG_0029	CNBG_6127	A0A095CXV6	A0A095CLY5	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.886
CNBG_0029	CNBG_9069	A0A095CXV6	A0A0L6DI37	Uncharacterized protein.	Pol II transcription elongation factor.	0.576
CNBG_0029	CNBG_9246	A0A095CXV6	A0A0L6DIQ7	Uncharacterized protein.	Uncharacterized protein.	0.637
CNBG_0038	CNBG_0029	A0A095BZJ3	A0A095CXV6	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.785
CNBG_0038	CNBG_0225	A0A095BZJ3	A0A095C113	DNA-directed RNA polymerase I subunit RPA49.	Ubiquitin-40S ribosomal protein S27a.	0.785

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