(8 nodes) Rab subfamily of small GTPases network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	CNBG_4772	GTP-binding protein ryh1. (211 aa)
	CNBG_6083	Rab family protein. (233 aa)
	CNBG_4824	Rab family protein. (253 aa)
	CNBG_3206	RAB small monomeric GTPase. (206 aa)
	CNBG_3471	GTP-binding protein ypt2. (211 aa)
	CNBG_4002	Rab family protein. (231 aa)
	CNBG_4076	GTP-binding protein ypt3. (213 aa)
	CNBG_4617	GTP-binding protein ypt1. (205 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_3206	CNBG_3471	A0A095EJF3	A0A095EKF7	RAB small monomeric GTPase.	GTP-binding protein ypt2.	0.459
CNBG_3206	CNBG_4002	A0A095EJF3	A0A095CBK8	RAB small monomeric GTPase.	Rab family protein.	0.782
CNBG_3206	CNBG_4076	A0A095EJF3	A0A095CEV5	RAB small monomeric GTPase.	GTP-binding protein ypt3.	0.820
CNBG_3206	CNBG_4617	A0A095EJF3	A0A095CHA4	RAB small monomeric GTPase.	GTP-binding protein ypt1.	0.845
CNBG_3206	CNBG_4772	A0A095EJF3	A0A095CHR1	RAB small monomeric GTPase.	GTP-binding protein ryh1.	0.714
CNBG_3206	CNBG_4824	A0A095EJF3	A0A095DDS4	RAB small monomeric GTPase.	Rab family protein.	0.728
CNBG_3206	CNBG_6083	A0A095EJF3	A0A095CIT3	RAB small monomeric GTPase.	Rab family protein.	0.684
CNBG_3471	CNBG_3206	A0A095EKF7	A0A095EJF3	GTP-binding protein ypt2.	RAB small monomeric GTPase.	0.459
CNBG_3471	CNBG_4002	A0A095EKF7	A0A095CBK8	GTP-binding protein ypt2.	Rab family protein.	0.781
CNBG_3471	CNBG_4076	A0A095EKF7	A0A095CEV5	GTP-binding protein ypt2.	GTP-binding protein ypt3.	0.797
CNBG_3471	CNBG_4617	A0A095EKF7	A0A095CHA4	GTP-binding protein ypt2.	GTP-binding protein ypt1.	0.942
CNBG_3471	CNBG_4772	A0A095EKF7	A0A095CHR1	GTP-binding protein ypt2.	GTP-binding protein ryh1.	0.719
CNBG_3471	CNBG_4824	A0A095EKF7	A0A095DDS4	GTP-binding protein ypt2.	Rab family protein.	0.704
CNBG_3471	CNBG_6083	A0A095EKF7	A0A095CIT3	GTP-binding protein ypt2.	Rab family protein.	0.742
CNBG_4002	CNBG_3206	A0A095CBK8	A0A095EJF3	Rab family protein.	RAB small monomeric GTPase.	0.782
CNBG_4002	CNBG_3471	A0A095CBK8	A0A095EKF7	Rab family protein.	GTP-binding protein ypt2.	0.781
CNBG_4002	CNBG_4076	A0A095CBK8	A0A095CEV5	Rab family protein.	GTP-binding protein ypt3.	0.667
CNBG_4002	CNBG_4617	A0A095CBK8	A0A095CHA4	Rab family protein.	GTP-binding protein ypt1.	0.648
CNBG_4002	CNBG_4772	A0A095CBK8	A0A095CHR1	Rab family protein.	GTP-binding protein ryh1.	0.797
CNBG_4002	CNBG_4824	A0A095CBK8	A0A095DDS4	Rab family protein.	Rab family protein.	0.722

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