(39 nodes) Ring finger network (Cryptococcus gattii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNBG_9165	CDK-activating kinase assembly factor MAT1. (373 aa)
	CNBG_0013	Uncharacterized protein. (455 aa)
	CNBG_0658	RING-type domain-containing protein. (662 aa)
	CNBG_1088	Ligase. (859 aa)
	CNBG_0597	E3 ubiquitin-protein ligase SHPRH. (1588 aa)
	CNBG_1873	RING-type domain-containing protein. (314 aa)
	CNBG_2073	RING-type domain-containing protein. (1010 aa)
	CNBG_1322	RING-type domain-containing protein. (488 aa)
	CNBG_2230	Cytoplasmic protein. (589 aa)
	CNBG_1472	Anaphase-promoting complex subunit 11. (164 aa)
	CNBG_2435	BRCA1-associated protein. (679 aa)
	CNBG_2087	Cytoplasmic protein. (845 aa)
	CNBG_3283	RBR-type E3 ubiquitin transferase. (548 aa)
	CNBG_3523	RING-type domain-containing protein. (724 aa)
	CNBG_2757	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family. (1042 aa)
	CNBG_2787	RING-type domain-containing protein. (418 aa)
	CNBG_4308	Peroxin-10. (344 aa)
	CNBG_4393	E3 ubiquitin-protein ligase synoviolin. (739 aa)
	CNBG_4405	RING-type domain-containing protein. (414 aa)
	CNBG_4211	DNA repair protein RAD16. (1022 aa)
	CNBG_5273	RING-type domain-containing protein. (561 aa)
	CNBG_5082	E3 ubiquitin-protein ligase PEP5. (1068 aa)
	CNBG_0914	Uncharacterized protein. (395 aa)
	CNBG_1129	RING-type domain-containing protein. (1207 aa)
	CNBG_1759	RING-CH-type domain-containing protein. (382 aa)
	CNBG_2749	E3 ubiquitin protein ligase. (820 aa)
	CNBG_2884	RBR-type E3 ubiquitin transferase. (523 aa)
	CNBG_4334	DNA repair protein rad18. (364 aa)
	CNBG_4734	Peroxin-12. (447 aa)
	CNBG_5359	RING-type domain-containing protein. (537 aa)
	CNBG_5999	DNA repair protein RAD5. (1359 aa)
	CNBG_0786	Protein MPE1. (598 aa)
	CNBG_3945	RING-type domain-containing protein. (726 aa)
	CNBG_4691	RING-type domain-containing protein. (618 aa)
	CNBG_5316	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1856 aa)
	CNBG_5356	RING-type domain-containing protein. (1826 aa)
	CNBG_6046	Alkylbase DNA N-glycosylase. (743 aa)
	CNBG_9007	Uncharacterized protein. (1325 aa)
	CNBG_9156	Zinc finger family protein. (1659 aa)

Your Current Organism:

Cryptococcus gattii

NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNBG_0597	CNBG_4211	A0A095C4N1	A0A095CFC8	E3 ubiquitin-protein ligase SHPRH.	DNA repair protein RAD16.	0.410
CNBG_0597	CNBG_4334	A0A095C4N1	A0A095DC78	E3 ubiquitin-protein ligase SHPRH.	DNA repair protein rad18.	0.884
CNBG_0786	CNBG_2749	A0A095EBQ6	A0A095D6Z4	Protein MPE1.	E3 ubiquitin protein ligase.	0.537
CNBG_0786	CNBG_2884	A0A095EBQ6	A0A095D7G2	Protein MPE1.	RBR-type E3 ubiquitin transferase.	0.563
CNBG_1322	CNBG_2884	A0A095C727	A0A095D7G2	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.563
CNBG_1759	CNBG_4393	A0A095D3L4	A0A095CDJ2	RING-CH-type domain-containing protein.	E3 ubiquitin-protein ligase synoviolin.	0.645
CNBG_1759	CNBG_5316	A0A095D3L4	A0A095ERK8	RING-CH-type domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.572
CNBG_2087	CNBG_5356	A0A095C9A6	A0A095ERQ4	Cytoplasmic protein.	RING-type domain-containing protein.	0.626
CNBG_2435	CNBG_9156	A0A095C7Z8	A0A0L6DIX2	BRCA1-associated protein.	Zinc finger family protein.	0.482
CNBG_2749	CNBG_0786	A0A095D6Z4	A0A095EBQ6	E3 ubiquitin protein ligase.	Protein MPE1.	0.537
CNBG_2749	CNBG_4334	A0A095D6Z4	A0A095DC78	E3 ubiquitin protein ligase.	DNA repair protein rad18.	0.467
CNBG_2749	CNBG_5316	A0A095D6Z4	A0A095ERK8	E3 ubiquitin protein ligase.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.441
CNBG_2757	CNBG_5082	A0A095CBD9	A0A095CIP2	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	E3 ubiquitin-protein ligase PEP5.	0.997
CNBG_2787	CNBG_2884	A0A095CBH8	A0A095D7G2	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.671
CNBG_2787	CNBG_9156	A0A095CBH8	A0A0L6DIX2	RING-type domain-containing protein.	Zinc finger family protein.	0.803
CNBG_2884	CNBG_0786	A0A095D7G2	A0A095EBQ6	RBR-type E3 ubiquitin transferase.	Protein MPE1.	0.563
CNBG_2884	CNBG_1322	A0A095D7G2	A0A095C727	RBR-type E3 ubiquitin transferase.	RING-type domain-containing protein.	0.563
CNBG_2884	CNBG_2787	A0A095D7G2	A0A095CBH8	RBR-type E3 ubiquitin transferase.	RING-type domain-containing protein.	0.671
CNBG_2884	CNBG_3283	A0A095D7G2	A0A095CA27	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.692
CNBG_2884	CNBG_5356	A0A095D7G2	A0A095ERQ4	RBR-type E3 ubiquitin transferase.	RING-type domain-containing protein.	0.575

page 1 of 3

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About