(27 nodes) Peptidyl-histidine phosphorylation network (Yersinia rohdei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rstB	HAMP domain protein. (438 aa)
	ypdA	5TMR of 5TMR-LYT family protein. (549 aa)
	cpxA_1	HAMP domain protein. (452 aa)
	baeS_2	HAMP domain protein. (458 aa)
	bvgS	Hpt domain protein. (1284 aa)
	glrK	HAMP domain protein. (478 aa)
	nreB	Histidine kinase family protein. (518 aa)
	dpiB	Sensor histidine kinase DpiB. (534 aa)
	baeS_1	HAMP domain protein. (476 aa)
	cheA	Signal transducing histidine kinase, homodimeric domain protein. (679 aa)
	arcB	Sensory box protein. (778 aa)
	envZ	HAMP domain protein. (453 aa)
	yehU	Histidine kinase family protein. (565 aa)
	ttrS	His Kinase A domain protein. (579 aa)
	phoQ	HAMP domain protein. (468 aa)
	kdpD	Universal stress family protein. (895 aa)
	phoR	phoR_proteo: phosphate regulon sensor kinase PhoR. (438 aa)
	barA	HAMP domain protein. (920 aa)
	narX	Nitrate/nitrite sensor protein narX. (593 aa)
	evgS	Sensor protein evgS. (1207 aa)
	dcuS	PAS fold family protein. (563 aa)
	basS	HAMP domain protein. (353 aa)
	torS	Hpt domain protein. (927 aa)
	cpxA	Sensor protein CpxA. (458 aa)
	glnL	Nitrogen regulation protein NR. (349 aa)
	fixL	His Kinase A domain protein. (449 aa)
	uhpB	Histidine kinase family protein. (509 aa)

Your Current Organism:

Yersinia rohdei

NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arcB	baeS_1	CH64_2168	CH64_1911	Sensory box protein.	HAMP domain protein.	0.926
arcB	baeS_2	CH64_2168	CH64_1436	Sensory box protein.	HAMP domain protein.	0.878
arcB	barA	CH64_2168	CH64_3359	Sensory box protein.	HAMP domain protein.	0.999
arcB	basS	CH64_2168	CH64_3050	Sensory box protein.	HAMP domain protein.	0.936
arcB	bvgS	CH64_2168	CH64_149	Sensory box protein.	Hpt domain protein.	0.999
arcB	cheA	CH64_2168	CH64_203	Sensory box protein.	Signal transducing histidine kinase, homodimeric domain protein.	0.683
arcB	cpxA	CH64_2168	CH64_2672	Sensory box protein.	Sensor protein CpxA.	0.944
arcB	cpxA_1	CH64_2168	CH64_1362	Sensory box protein.	HAMP domain protein.	0.932
arcB	envZ	CH64_2168	CH64_2405	Sensory box protein.	HAMP domain protein.	0.944
arcB	evgS	CH64_2168	CH64_3148	Sensory box protein.	Sensor protein evgS.	0.999
arcB	fixL	CH64_2168	CH64_2562	Sensory box protein.	His Kinase A domain protein.	0.838
arcB	glnL	CH64_2168	CH64_2622	Sensory box protein.	Nitrogen regulation protein NR.	0.618
arcB	glrK	CH64_2168	CH64_1497	Sensory box protein.	HAMP domain protein.	0.930
arcB	kdpD	CH64_2168	CH64_3766	Sensory box protein.	Universal stress family protein.	0.874
arcB	narX	CH64_2168	CH64_333	Sensory box protein.	Nitrate/nitrite sensor protein narX.	0.449
arcB	phoQ	CH64_2168	CH64_905	Sensory box protein.	HAMP domain protein.	0.938
arcB	phoR	CH64_2168	CH64_3537	Sensory box protein.	phoR_proteo: phosphate regulon sensor kinase PhoR.	0.846
arcB	rstB	CH64_2168	CH64_628	Sensory box protein.	HAMP domain protein.	0.933
arcB	torS	CH64_2168	CH64_2911	Sensory box protein.	Hpt domain protein.	0.999
arcB	ttrS	CH64_2168	CH64_954	Sensory box protein.	His Kinase A domain protein.	0.843