STRINGSTRING
cynT cynT ychM ychM AKA37184.1 AKA37184.1 AKA37410.1 AKA37410.1 hreP hreP AKA37844.1 AKA37844.1 yadF yadF iphP iphP hasA hasA yrdA yrdA can can yadQ yadQ yspC yspC yspD yspD AKA39359.1 AKA39359.1 AKA39361.1 AKA39361.1 yopH yopH ymoA ymoA tomB tomB focA focA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cynTCarbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
ychMTransporter; Role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)
AKA37184.1Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
AKA37410.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
hrePPeptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (547 aa)
AKA37844.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
yadFCarbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (213 aa)
iphPC4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
hasAHeme acquisition hemophore HasA; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
yrdAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
canCarbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (218 aa)
yadQH(+)/Cl(-) exchange transporter ClcA; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
yspCHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
yspDHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
AKA39359.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (780 aa)
AKA39361.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
yopHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
ymoAGene expression modulator; With Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
tomBBiofilm formation regulator YbaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
focAFormate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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