14 items (Aeromonas salmonicida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dppC	Unannotated protein. (313 aa)
	dppB	Unannotated protein. (324 aa)
	dppA	Unannotated protein. (518 aa)
	dppD	Unannotated protein; Belongs to the ABC transporter superfamily. (574 aa)
	A4SQC2_AERS4	Unannotated protein. (561 aa)
	A4SQC3_AERS4	Unannotated protein. (324 aa)
	A4SQC4_AERS4	Unannotated protein. (302 aa)
	A4SQC5_AERS4	Unannotated protein; Belongs to the ABC transporter superfamily. (339 aa)
	A4SQC6_AERS4	Unannotated protein; Belongs to the ABC transporter superfamily. (326 aa)
	dppA-2	Unannotated protein. (535 aa)
	dppB-2	Unannotated protein. (334 aa)
	dppC-2	Unannotated protein. (271 aa)
	dppD-2	Unannotated protein. (262 aa)
	dppE	Unannotated protein. (213 aa)

Your Current Organism:

Aeromonas salmonicida

NCBI taxonomy Id: 29491
Other names: A. salmonicida subsp. salmonicida, Aeromonas salmonicida salmonicida, Aeromonas salmonicida subsp. salmonicida

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4SQC2_AERS4	A4SQC3_AERS4	GCA_000820065_03024	GCA_000820065_03025	Unannotated protein.	Unannotated protein.	0.951
A4SQC2_AERS4	A4SQC4_AERS4	GCA_000820065_03024	GCA_000820065_03026	Unannotated protein.	Unannotated protein.	0.947
A4SQC2_AERS4	A4SQC5_AERS4	GCA_000820065_03024	GCA_000820065_03027	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.904
A4SQC2_AERS4	A4SQC6_AERS4	GCA_000820065_03024	GCA_000820065_03028	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.898
A4SQC2_AERS4	dppA-2	GCA_000820065_03024	GCA_000820065_03059	Unannotated protein.	Unannotated protein.	0.444
A4SQC2_AERS4	dppB	GCA_000820065_03024	GCA_000820065_01196	Unannotated protein.	Unannotated protein.	0.680
A4SQC2_AERS4	dppB-2	GCA_000820065_03024	GCA_000820065_03060	Unannotated protein.	Unannotated protein.	0.713
A4SQC2_AERS4	dppC	GCA_000820065_03024	GCA_000820065_01195	Unannotated protein.	Unannotated protein.	0.653
A4SQC2_AERS4	dppC-2	GCA_000820065_03024	GCA_000820065_03061	Unannotated protein.	Unannotated protein.	0.655
A4SQC2_AERS4	dppD-2	GCA_000820065_03024	GCA_000820065_03062	Unannotated protein.	Unannotated protein.	0.458
A4SQC2_AERS4	dppE	GCA_000820065_03024	GCA_000820065_03063	Unannotated protein.	Unannotated protein.	0.419
A4SQC3_AERS4	A4SQC2_AERS4	GCA_000820065_03025	GCA_000820065_03024	Unannotated protein.	Unannotated protein.	0.951
A4SQC3_AERS4	A4SQC4_AERS4	GCA_000820065_03025	GCA_000820065_03026	Unannotated protein.	Unannotated protein.	0.986
A4SQC3_AERS4	A4SQC5_AERS4	GCA_000820065_03025	GCA_000820065_03027	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.977
A4SQC3_AERS4	A4SQC6_AERS4	GCA_000820065_03025	GCA_000820065_03028	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.975
A4SQC3_AERS4	dppA	GCA_000820065_03025	GCA_000820065_01197	Unannotated protein.	Unannotated protein.	0.694
A4SQC3_AERS4	dppA-2	GCA_000820065_03025	GCA_000820065_03059	Unannotated protein.	Unannotated protein.	0.757
A4SQC3_AERS4	dppC	GCA_000820065_03025	GCA_000820065_01195	Unannotated protein.	Unannotated protein.	0.905
A4SQC3_AERS4	dppC-2	GCA_000820065_03025	GCA_000820065_03061	Unannotated protein.	Unannotated protein.	0.907
A4SQC3_AERS4	dppD	GCA_000820065_03025	GCA_000820065_01198	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.861