STRINGSTRING
A4SL65_AERS4 A4SL65_AERS4 GCA_000820065_00151 GCA_000820065_00151 A4SP45_AERS4 A4SP45_AERS4 A4SNZ7_AERS4 A4SNZ7_AERS4 A4SNY7_AERS4 A4SNY7_AERS4 A4SUB5_AERS4 A4SUB5_AERS4 GCA_000820065_00411 GCA_000820065_00411 A4SMU7_AERS4 A4SMU7_AERS4 A4SMU8_AERS4 A4SMU8_AERS4 rpoZ rpoZ A4SMM8_AERS4 A4SMM8_AERS4 A4SKC0_AERS4 A4SKC0_AERS4 rpoS rpoS dnaG dnaG rpoD rpoD dppC dppC sigY sigY A4SHM7_AERS4 A4SHM7_AERS4 A4SMR3_AERS4 A4SMR3_AERS4 rep rep GCA_000820065_01445 GCA_000820065_01445 citB citB nadE nadE GCA_000820065_02118 GCA_000820065_02118 A4SLI7_AERS4 A4SLI7_AERS4 oppC oppC radC radC A4SRP5_AERS4 A4SRP5_AERS4 A4SRW1_AERS4 A4SRW1_AERS4 GCA_000820065_02527 GCA_000820065_02527 A4SQC4_AERS4 A4SQC4_AERS4 dppC-2 dppC-2 rpoB rpoB rpoC rpoC fliA fliA rpoN rpoN A4ST39_AERS4 A4ST39_AERS4 rpoA rpoA dgt dgt A4SL64_AERS4 A4SL64_AERS4 A4SH99_AERS4 A4SH99_AERS4 rep-3 rep-3 lafS lafS Y4229_AERS4 Y4229_AERS4 A4SUC6_AERS4 A4SUC6_AERS4 A4SUK9_AERS4 A4SUK9_AERS4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A4SL65_AERS4Unannotated protein. (170 aa)
GCA_000820065_00151Unannotated protein. (136 aa)
A4SP45_AERS4Unannotated protein. (268 aa)
A4SNZ7_AERS4Unannotated protein. (77 aa)
A4SNY7_AERS4Unannotated protein; Belongs to the UPF0145 family. (105 aa)
A4SUB5_AERS4Unannotated protein; Belongs to the UPF0145 family. (177 aa)
GCA_000820065_00411Unannotated protein. (337 aa)
A4SMU7_AERS4Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
A4SMU8_AERS4Unannotated protein. (247 aa)
rpoZUnannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (91 aa)
A4SMM8_AERS4Unannotated protein. (356 aa)
A4SKC0_AERS4Unannotated protein. (230 aa)
rpoSUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (327 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (595 aa)
rpoDUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (616 aa)
dppCUnannotated protein. (313 aa)
sigYUnannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
A4SHM7_AERS4Unannotated protein. (225 aa)
A4SMR3_AERS4Unannotated protein; Belongs to the UPF0758 family. (148 aa)
repUnannotated protein. (324 aa)
GCA_000820065_01445Unannotated protein. (278 aa)
citBUnannotated protein. (223 aa)
nadEUnannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (540 aa)
GCA_000820065_02118Unannotated protein. (189 aa)
A4SLI7_AERS4Unannotated protein. (223 aa)
oppCUnannotated protein. (303 aa)
radCUnannotated protein; Belongs to the UPF0758 family. (148 aa)
A4SRP5_AERS4Unannotated protein. (302 aa)
A4SRW1_AERS4Unannotated protein. (934 aa)
GCA_000820065_02527Unannotated protein. (56 aa)
A4SQC4_AERS4Unannotated protein. (302 aa)
dppC-2Unannotated protein. (271 aa)
rpoBUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1342 aa)
rpoCUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1434 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (239 aa)
rpoNUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (479 aa)
A4ST39_AERS4Unannotated protein. (193 aa)
rpoAUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
dgtUnannotated protein; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs. (454 aa)
A4SL64_AERS4Unannotated protein. (161 aa)
A4SH99_AERS4Unannotated protein. (242 aa)
rep-3Unannotated protein. (335 aa)
lafSUnannotated protein; Belongs to the sigma-70 factor family. (235 aa)
Y4229_AERS4Unannotated protein; Belongs to the UPF0758 family. (220 aa)
A4SUC6_AERS4Unannotated protein. (210 aa)
A4SUK9_AERS4Unannotated protein. (240 aa)
Your Current Organism:
Aeromonas salmonicida
NCBI taxonomy Id: 29491
Other names: A. salmonicida subsp. salmonicida, Aeromonas salmonicida salmonicida, Aeromonas salmonicida subsp. salmonicida
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