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rplS rplS rpmA rpmA rplU rplU rpsP rpsP rpsB rpsB rpsI rpsI rplM rplM rplL rplL BF4194 BF4194 rplA rplA rplK rplK rpsO rpsO
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplS50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa)
rpmA50S ribosomal protein L27; Similar to gp:AE016944_169 [Bacteroides thetaiotaomicron VPI-5482], percent identity 96 in 89 aa, BLASTP E(): 4e-44; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa)
rpsP30S ribosomal protein S16; Similar to sp:RS16_BACTN [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 184 aa, BLASTP E(): 2e-86; Belongs to the bacterial ribosomal protein bS16 family. (181 aa)
rpsB30S ribosomal protein S2 (BS1); Similar to gp:AE016942_150 [Bacteroides thetaiotaomicron VPI-5482], percent identity 97 in 278 aa, BLASTP E(): e-150; Belongs to the universal ribosomal protein uS2 family. (278 aa)
rpsI30S ribosomal protein S9; Similar to gp:AE016942_149 [Bacteroides thetaiotaomicron VPI-5482], percent identity 96 in 128 aa, BLASTP E(): 2e-64; Belongs to the universal ribosomal protein uS9 family. (128 aa)
rplM50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (153 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (124 aa)
BF419450S ribosomal protein L10; Similar to gp:AE016937_76 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 170 aa, BLASTP E(): 8e-83. (170 aa)
rplA50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa)
rplK50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (147 aa)
rpsO30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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