STRINGSTRING
rnc rnc acpP acpP rsfS rsfS obg obg BF1432 BF1432 BF2280 BF2280 BF2539 BF2539 BF2540 BF2540 BF3660 BF3660 BF3726 BF3726
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (290 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (78 aa)
rsfSConserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (119 aa)
obgGTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (386 aa)
BF1432Putative acyl carrier protein; Similar to sp:ACP_THETN [Thermoanaerobacter tengcongensis], percent identity 37 in 49 aa, BLASTP E():0.003. (73 aa)
BF2280Putative tRNA/rRNA methyltransferase; Similar to gp:AE016929_81 [Bacteroides thetaiotaomicron VPI-5482], percent identity 77 in 250 aa, BLASTP E(): e-112; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (253 aa)
BF2539RNA methyltransferase; Similar to gp:AE016928_156 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 454 aa, BLASTP E(): 0.0; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (472 aa)
BF2540RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (307 aa)
BF3660Conserved hypothetical protein; Similar to gpu:BX571875_36 [Photorhabdus luminescens subsp. laumondii TTO1], percent identity 44 in 381 aa, BLASTP E(): 1e-80. (400 aa)
BF3726tRNA and rRNA cytosine-C5-methylase; Similar to gp:AE016934_123 [Bacteroides thetaiotaomicron VPI-5482], percent identity 68 in 492 aa, BLASTP E(): 0.0. (472 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.