STRINGSTRING
bioD bioD bioC bioC BF1602 BF1602 bioB bioB BF1604 BF1604 BF2377 BF2377 BF2983 BF2983 BF2984 BF2984 BF2986 BF2986 BF2987 BF2987 kbl kbl BF2989 BF2989
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bioDDethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (213 aa)
bioCPutative biotin synthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway (By similarity). (491 aa)
BF16028-amino-7-oxononanoate synthase; Similar to gp:AE016931_234 [Bacteroides thetaiotaomicron VPI-5482], percent identity 68 in 374 aa, BLASTP E(): e-146. (397 aa)
bioBAdenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L- methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8- diaminopelargonic acid (DAPA); In the C-terminal section; belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (748 aa)
BF1604Hypothetical protein. (133 aa)
BF23778-amino-7-oxononanoate synthase; Similar to gpu:AE017178_53 [Porphyromonas gingivalis W83], percent identity 75 in 387 aa, BLASTP E(): e-174. (394 aa)
BF2983Conserved hypothetical protein; Similar to gp:AE016931_157 [Bacteroides thetaiotaomicron VPI-5482], percent identity 54 in 540 aa, BLASTP E(): e-172. (545 aa)
BF2984Metal-dependent hydrolase; Similar to gp:AE016931_158 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 250 aa, BLASTP E(): e-109. (252 aa)
BF2986Conserved hypothetical protein; Similar to gp:AE016931_160 [Bacteroides thetaiotaomicron VPI-5482], percent identity 77 in 284 aa, BLASTP E(): e-127. (284 aa)
BF2987NAD-dependent nucleotide-diphosphate-sugar epimerase; Similar to gp:AE016931_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 317 aa, BLASTP E(): e-166. (317 aa)
kbl2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (395 aa)
BF2989Conserved hypothetical protein; Similar to gp:AE016931_163 [Bacteroides thetaiotaomicron VPI-5482], percent identity 85 in 134 aa, BLASTP E(): 8e-56. (134 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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