STRINGSTRING
BF0630 BF0630 BF0652 BF0652 BF0738 BF0738 BF0936 BF0936 BF0937 BF0937 BF0938 BF0938 BF0939 BF0939 BF1504 BF1504 BF1760 BF1760 BF2033 BF2033 BF2070 BF2070 BF2115 BF2115 BF2633 BF2633 BF3089 BF3089 BF3090 BF3090 BF3091 BF3091 BF3092 BF3092 BF3093 BF3093 BF3094 BF3094 BF3363 BF3363 BF3490 BF3490 BF3539 BF3539 BF3851 BF3851 BF4305 BF4305
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BF0630Putative transcriptional regulator; Similar to pir:AD2129, percent identity 34 in 199 aa, BLASTP E(): 3e-24. (335 aa)
BF0652Putative transcriptional regulator; Similar to gp:AE016812_175 [Vibrio vulnificus CMCP6], percent identity 23 in 269 aa, BLASTP E(): 1e-15. (280 aa)
BF0738Conserved hypothetical protein; Similar to gp:AE016943_19 [Bacteroides thetaiotaomicron VPI-5482], percent identity 54 in 261 aa, BLASTP E(): 2e-78. (291 aa)
BF0936Putative beta-galactosidase; Similar to gp:AE016944_7 [Bacteroides thetaiotaomicron VPI-5482], percent identity 34 in 952 aa, BLASTP E(): e-147; Belongs to the glycosyl hydrolase 2 family. (923 aa)
BF0937Conserved hypothetical protein; Similar to gp:AE016945_42 [Bacteroides thetaiotaomicron VPI-5482], percent identity 61 in 1095 aa, BLASTP E(): 0.0. (1100 aa)
BF0938xylose/H+ symporter; Similar to gp:AE016945_41 [Bacteroides thetaiotaomicron VPI-5482], percent identity 59 in 456 aa, BLASTP E(): e-158; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (459 aa)
BF0939Transcriptional regulator; Similar to gp:AE016945_40 [Bacteroides thetaiotaomicron VPI-5482], percent identity 61 in 298 aa, BLASTP E(): e-103. (318 aa)
BF1504Transcriptional regulator; Similar to gp:AE016928_242 [Bacteroides thetaiotaomicron VPI-5482], percent identity 68 in 297 aa, BLASTP E(): e-117. (299 aa)
BF1760Transcriptional regulator; Similar to gp:AE016941_95 [Bacteroides thetaiotaomicron VPI-5482], percent identity 42 in 382 aa, BLASTP E(): 2e-90. (391 aa)
BF2033AraC-type transcription regulator; Similar to gp:AE016930_109 [Bacteroides thetaiotaomicron VPI-5482], percent identity 66 in 279 aa, BLASTP E(): e-106. (279 aa)
BF2070Putative transcriptional regulator; Similar to gp:RLU40388_2 [Rhizobium leguminosarum], percent identity 31 in 163 aa, BLASTP E(): 2e-16. (305 aa)
BF2115Putative AraC-type transcription regulator; Similar to gp:AE016943_19 [Bacteroides thetaiotaomicron VPI-5482], percent identity 37 in 257 aa, BLASTP E(): 5e-39. (290 aa)
BF2633Transcriptional regulator; Similar to gp:AE016928_72 [Bacteroides thetaiotaomicron VPI-5482], percent identity 56 in 296 aa, BLASTP E(): 2e-90. (320 aa)
BF3089Hypothetical protein. (78 aa)
BF3090Trk system K+ uptake protein TrkH; Similar to gp:AE016943_142 [Bacteroides thetaiotaomicron VPI-5482], percent identity 58 in 481 aa, BLASTP E(): e-168. (499 aa)
BF3091Transcriptional regulator; Similar to gp:AE016934_49 [Bacteroides thetaiotaomicron VPI-5482], percent identity 30 in 245 aa, BLASTP E(): 5e-25. (276 aa)
BF3092Putative membrane transport protein; Similar to gp:AE016760_91 [Escherichia coli CFT073], percent identity 42 in 368 aa, BLASTP E(): 3e-72. (390 aa)
BF3093Putative oxidoreductase; Similar to gp:AE016945_140 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 242 aa, BLASTP E(): 2e-96. (254 aa)
BF3094AraC-type transcriptional regulator; Similar to gp:AE016933_191 [Bacteroides thetaiotaomicron VPI-5482], percent identity 39 in 283 aa, BLASTP E(): 2e-50. (280 aa)
BF3363Transcriptional regulator; Similar to gp:AE016934_201 [Bacteroides thetaiotaomicron VPI-5482], percent identity 59 in 284 aa, BLASTP E(): 2e-91. (292 aa)
BF3490Transcription regulator; Similar to gp:AL935262_70 [Lactobacillus plantarum WCFS1], percent identity 23 in 266 aa, BLASTP E(): 3e-15. (279 aa)
BF3539Transcriptional regulator; Similar to C-terminal of gp:AE016934_49 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 187 aa, BLASTP E(): 1e-76, Truncated by frameshift mutation. (192 aa)
BF3851Transcriptional regulator; Similar to gp:AE016946_82 [Bacteroides thetaiotaomicron VPI-5482], percent identity 25 in 594 aa, BLASTP E(): 9e-44. (607 aa)
BF4305Transcriptional regulator; Similar to gp:AE016928_241 [Bacteroides thetaiotaomicron VPI-5482], percent identity 54 in 297 aa, BLASTP E(): 9e-90. (298 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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