STRINGSTRING
BF2037 BF2037 BF0017 BF0017 BF0026 BF0026 BF0065 BF0065 BF0067 BF0067 BF0070 BF0070 BF0082 BF0082 polA polA dtd dtd uvrC uvrC ybeY ybeY BF0170 BF0170 BF0198 BF0198 rnc rnc BF0231 BF0231 rnhB rnhB BF0323 BF0323 BF0382 BF0382 BF0390 BF0390 BF0398 BF0398 BF0477 BF0477 BF0480 BF0480 BF0565 BF0565 BF0570 BF0570 BF0634 BF0634 BF0663 BF0663 BF0712 BF0712 BF0731.1 BF0731.1 surE surE BF0826 BF0826 BF0878 BF0878 BF0881 BF0881 BF0893 BF0893 BF0914 BF0914 BF0961 BF0961 BF0989 BF0989 BF1026 BF1026 BF1031 BF1031 BF1042 BF1042 rnz rnz valS valS BF1058 BF1058 BF1064 BF1064 BF1065 BF1065 BF1069 BF1069 BF1126 BF1126 BF1142 BF1142 BF1174 BF1174 pth pth BF1231 BF1231 nfo nfo BF1256 BF1256 BF1257 BF1257 mutS2 mutS2 BF1293 BF1293 BF1364.1 BF1364.1 BF1455 BF1455 BF1552 BF1552 BF1555 BF1555 BF1583 BF1583 cysQ cysQ BF1683 BF1683 BF1697 BF1697 BF1731 BF1731 BF1732 BF1732 BF1756 BF1756 BF1770 BF1770 BF1808 BF1808 fbp fbp BF1879 BF1879 BF2026 BF2026 BF2134 BF2134 BF2162 BF2162 BF2190 BF2190 BF2264 BF2264 ileS ileS BF2300 BF2300 BF2316 BF2316 BF2345.4 BF2345.4 BF2462 BF2462 BF2472 BF2472 BF2482 BF2482 BF2488 BF2488 cas2 cas2 cas1 cas1 BF2545 BF2545 BF2550 BF2550 BF2560 BF2560 BF2611 BF2611 BF2612 BF2612 uvrB uvrB BF2640 BF2640 BF2934 BF2934 BF2939 BF2939 BF2944 BF2944 BF2952 BF2952 BF2980 BF2980 BF2981 BF2981 BF3079 BF3079 BF3083 BF3083 BF3117 BF3117 hisB hisB BF3247 BF3247 BF3248 BF3248 BF3255 BF3255 ruvC ruvC nth nth BF3282 BF3282 BF3320 BF3320 BF3379 BF3379 BF3431 BF3431 BF3491 BF3491 BF3493 BF3493 rny rny BF3628 BF3628 BF3646 BF3646 BF3673 BF3673 BF3682 BF3682 BF3683 BF3683 BF3706 BF3706 BF3743 BF3743 BF3760 BF3760 BF3774 BF3774 BF3776 BF3776 BF3778 BF3778 BF3818 BF3818 BF3847 BF3847 BF3883 BF3883 BF3906 BF3906 BF3932 BF3932 BF3948 BF3948 BF3949 BF3949 BF3989 BF3989 BF3990 BF3990 BF3998 BF3998 xseA xseA BF4067 BF4067 BF4093 BF4093 BF4137 BF4137 BF4138 BF4138 BF4208 BF4208 BF4236 BF4236 BF4260 BF4260 BF4261 BF4261 BF4291 BF4291 BF4389 BF4389 BF4444 BF4444 BF4472 BF4472 BF4541 BF4541 rnr rnr leuS leuS
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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BF2037Putative xylanase; Similar to N-terminal of gp:AE016930_106 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 286 aa, BLASTP E(): e-116, Truncated by frameshift mutation. (287 aa)
BF0017Arylsulfatase; Similar to gp:AE016946_68 [Bacteroides thetaiotaomicron VPI-5482], percent identity 66 in 499 aa, BLASTP E(): 0.0. (537 aa)
BF0026Putative coenzyme A transferase; Similar to gp:AE016939_103 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 499 aa, BLASTP E(): 0.0. (499 aa)
BF0065Putative ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (107 aa)
BF0067TatD-related DNase; Similar to gp:AE016939_139 [Bacteroides thetaiotaomicron VPI-5482], percent identity 42 in 222 aa, BLASTP E(): 6e-43. (211 aa)
BF0070Choline-sulfatase; Similar to gp:AE016933_205 [Bacteroides thetaiotaomicron VPI-5482], percent identity 64 in 521 aa, BLASTP E(): 0.0. (526 aa)
BF0082Putative integral membrane protein; Similar to gp:AE016939_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 78 in 157 aa, BLASTP E(): 9e-69. (158 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (935 aa)
dtdPutative D-tyrosyl-tRNA deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa)
uvrCExcinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (608 aa)
ybeYConserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (139 aa)
BF0170Conserved hypothetical protein; Similar to gp:AE016940_5 [Bacteroides thetaiotaomicron VPI-5482], percent identity 68 in 352 aa, BLASTP E(): e-141. (351 aa)
BF0198Haloacid dehalogenase-like hydrolase; Similar to gp:AE016940_53 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 267 aa, BLASTP E(): e-106. (278 aa)
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (290 aa)
BF0231Ribonuclease H-related protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (209 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (201 aa)
BF0323dGTP triphosphohydrolase; Similar to gp:AE016940_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 84 in 450 aa, BLASTP E(): 0.0. (451 aa)
BF0382Conserved hypothetical protein; Similar to gp:AE016938_127 [Bacteroides thetaiotaomicron VPI-5482], percent identity 66 in 290 aa, BLASTP E(): e-111. (303 aa)
BF0390Conserved hypothetical protein; Similar to gp:BX294152_118 [Pirellula sp.], percent identity 28 in 182 aa, BLASTP E(): 7e-22. (185 aa)
BF0398Conserved hypothetical protein; Similar to gp:AE016946_117 [Bacteroides thetaiotaomicron VPI-5482], percent identity 50 in 89 aa, BLASTP E(): 4e-18. (97 aa)
BF0477Hypothetical protein; Similar to gp:AE011123_2 [Methanosarcina acetivorans C2A], percent identity 28 in 125 aa, BLASTP E(): 3e-06. (518 aa)
BF0480Alkaline phosphatase III precursor; Similar to gp:AE016941_194 [Bacteroides thetaiotaomicron VPI-5482], percent identity 81 in 467 aa, BLASTP E(): 0.0; Belongs to the alkaline phosphatase family. (466 aa)
BF05655'-nucleotidase precursor; Similar to gp:AE016936_27 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 267 aa, BLASTP E(): e-114. (290 aa)
BF0570Arylsulfatase precursor; Similar to gp:AE016932_168 [Bacteroides thetaiotaomicron VPI-5482], percent identity 42 in 518 aa, BLASTP E(): e-110. (489 aa)
BF0634Hypothetical protein; Similar to gp:SCO939123_109 [Streptomyces coelicolor A3(2)], percent identity 40 in 90 aa, BLASTP E(): 3e-15. (216 aa)
BF0663Haloacid dehalogenase-like hydrolase; Similar to gp:AE016935_118 [Bacteroides thetaiotaomicron VPI-5482], percent identity 79 in 230 aa, BLASTP E(): e-106. (230 aa)
BF0712DNA polymerase III alpha subunit; Similar to gp:AE016935_77 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 1267 aa, BLASTP E(): 0.0. (1294 aa)
BF0731.1Hypothetical protein. (118 aa)
surEStationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (255 aa)
BF0826Conserved hypothetical protein; Similar to pir:F86692, percent identity 28 in 206 aa, BLASTP E(): 2e-15. (199 aa)
BF0878Putative secreted sulfatase ydeN precursor; Similar to gp:AE016942_69 [Bacteroides thetaiotaomicron VPI-5482], percent identity 78 in 518 aa, BLASTP E(): 0.0. (518 aa)
BF0881Putative sulfatase yidJ; Similar to gp:AE016942_72 [Bacteroides thetaiotaomicron VPI-5482], percent identity 78 in 474 aa, BLASTP E(): 0.0. (483 aa)
BF0893Conserved hypothetical protein; Similar to gp:AE016943_145 [Bacteroides thetaiotaomicron VPI-5482], percent identity 67 in 327 aa, BLASTP E(): e-130. (328 aa)
BF0914Conserved hypothetical protein; Similar to gp:AE016944_69 [Bacteroides thetaiotaomicron VPI-5482], percent identity 71 in 310 aa, BLASTP E(): e-126. (306 aa)
BF0961Putative histidinol-phosphatase; Similar to gp:AE016944_113 [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 260 aa, BLASTP E(): e-117; Belongs to the PHP hydrolase family. HisK subfamily. (262 aa)
BF0989Conserved hypothetical protein; Similar to gp:AE016943_176 [Bacteroides thetaiotaomicron VPI-5482], percent identity 69 in 261 aa, BLASTP E(): e-106. (261 aa)
BF1026Conserved hypothetical protein; Similar to gp:AE016944_185 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 192 aa, BLASTP E(): 2e-70. (189 aa)
BF1031Conserved hypothetical protein; Similar to gp:AE016944_188 [Bacteroides thetaiotaomicron VPI-5482], percent identity 81 in 209 aa, BLASTP E(): 2e-95. (216 aa)
BF1042RNA-directed DNA polymerase; Similar to gp:AE016944_198 [Bacteroides thetaiotaomicron VPI-5482], percent identity 57 in 375 aa, BLASTP E(): e-118. (370 aa)
rnzConserved hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa)
BF1058Conserved hypothetical protein; Similar to gp:AE016926_169 [Bacteroides thetaiotaomicron VPI-5482], percent identity 46 in 350 aa, BLASTP E(): 3e-92. (342 aa)
BF1064Putative arylsulfatase precursor; Similar to gp:AE016946_16 [Bacteroides thetaiotaomicron VPI-5482], percent identity 67 in 520 aa, BLASTP E(): 0.0. (521 aa)
BF1065Putative arylsulfatase; Similar to gp:AF339846_34 [Microscilla sp. PRE1], percent identity 56 in 509 aa, BLASTP E(): e-167. (523 aa)
BF1069Putative alkaline phosphatase; Similar to gp:AE016945_7 [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 524 aa, BLASTP E(): 0.0. (524 aa)
BF1126Conserved hypothetical protein; Similar to gp:AE016945_43 [Bacteroides thetaiotaomicron VPI-5482], percent identity 71 in 384 aa, BLASTP E(): e-162. (384 aa)
BF1142Type III restriction-modification system restriction subunit; Similar to gp:AE016771_305 [Escherichia coli CFT073], percent identity 45 in 1034 aa, BLASTP E(): 0.0. (1010 aa)
BF1174Probable DNA polymerase III epsilon chain; Similar to gpu:AE017172_195 [Porphyromonas gingivalis W83], percent identity 40 in 165 aa, BLASTP E(): 5e-24. (175 aa)
pthpeptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (187 aa)
BF1231Conserved hypothetical protein; Similar to gp:AE015478_6 [Shewanella oneidensis MR-1], percent identity 37 in 298 aa, BLASTP E(): 3e-50. (312 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (278 aa)
BF1256Conserved hypothetical protein; Similar to gp:AE016938_127 [Bacteroides thetaiotaomicron VPI-5482], percent identity 66 in 278 aa, BLASTP E(): e-111. (299 aa)
BF1257Conserved hypothetical protein; Similar to gp:AE016926_169 [Bacteroides thetaiotaomicron VPI-5482], percent identity 42 in 354 aa, BLASTP E(): 8e-69. (341 aa)
mutS2DNA mismatch repair protein MutS; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (832 aa)
BF1293N-acetylgalactosamine-6-sulfatase precursor; Similar to gp:AE016938_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 495 aa, BLASTP E(): 0.0. (509 aa)
BF1364.1Hypothetical protein. (118 aa)
BF1455Transcriptional regulator; Similar to gp:AE016946_82 [Bacteroides thetaiotaomicron VPI-5482], percent identity 27 in 594 aa, BLASTP E(): 9e-62. (605 aa)
BF1552Similar to gp:AE016932_32 [Bacteroides thetaiotaomicron VPI-5482], percent identity 94 in 524 aa, BLASTP E(): 0.0. (524 aa)
BF1555Putative arylsulfatase precursor; Similar to gp:AE016946_16 [Bacteroides thetaiotaomicron VPI-5482], percent identity 68 in 518 aa, BLASTP E(): 0.0. (522 aa)
BF1583Putative histidinol-phosphatase; Similar to gp:AE016932_10 [Bacteroides thetaiotaomicron VPI-5482], percent identity 77 in 276 aa, BLASTP E(): e-131; Belongs to the PHP hydrolase family. HisK subfamily. (277 aa)
cysQSulfite synthesis pathway protein CysQ; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (272 aa)
BF1683Putative endonuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (138 aa)
BF1697Putative endonuclease; Similar to gp:AE016927_165 [Bacteroides thetaiotaomicron VPI-5482], percent identity 56 in 286 aa, BLASTP E(): 9e-92. (292 aa)
BF1731Sialate O-acetylesterase; Similar to pir:AE1928, percent identity 32 in 183 aa, BLASTP E(): 2e-21. (220 aa)
BF1732Sialate O-acetylesterase; Similar to gp:AE016927_190 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 689 aa, BLASTP E(): 0.0. (690 aa)
BF1756Alkaline phosphatase; Similar to gp:ANB18016_1 [Antarctic bacterium TAB5], percent identity 38 in 342 aa, BLASTP E(): 1e-53; Belongs to the alkaline phosphatase family. (383 aa)
BF1770Conserved hypothetical protein; Similar to pir:A82488, percent identity 30 in 336 aa, BLASTP E(): 2e-33. (386 aa)
BF18082',3'-cyclic-nucleotide 2'-phosphodiesterase precursor; Similar to gp:AE016931_27 [Bacteroides thetaiotaomicron VPI-5482], percent identity 82 in 577 aa, BLASTP E(): 0.0; Belongs to the 5'-nucleotidase family. (579 aa)
fbpFructose-1,6-bisphosphatase; Similar to gp:AE016931_19 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 664 aa, BLASTP E(): 0.0. (664 aa)
BF1879Putative membrane-associated metal-dependent hydrolase; Similar to gp:AE008887_14 [Salmonella typhimurium LT2], percent identity 47 in 269 aa, BLASTP E(): 7e-68. (283 aa)
BF2026Putative metallo-beta-lactamase; Similar to gp:AE016930_165 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 203 aa, BLASTP E(): e-109. (212 aa)
BF2134Conserved hypothetical protein; Similar to gp:AE016930_76 [Bacteroides thetaiotaomicron VPI-5482], percent identity 76 in 959 aa, BLASTP E(): 0.0. (957 aa)
BF2162Putative beta-xylanase; Similar to gp:AE016930_106 [Bacteroides thetaiotaomicron VPI-5482], percent identity 52 in 229 aa, BLASTP E(): 2e-66. (248 aa)
BF2190Putative acetylhydrolase; Similar to gp:BX294142_1 [Pirellula sp.], percent identity 36 in 345 aa, BLASTP E(): 6e-55. (583 aa)
BF2264Probable phosphodiesterase I; Similar to gpu:AE017172_110 [Porphyromonas gingivalis W83], percent identity 37 in 380 aa, BLASTP E(): 7e-76. (402 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1141 aa)
BF2300Putative phosphoserine phosphatase; Similar to gp:AE016929_102 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 409 aa, BLASTP E(): 0.0. (407 aa)
BF2316Conserved hypothetical protein; Similar to gp:AE016929_90 [Bacteroides thetaiotaomicron VPI-5482], percent identity 39 in 103 aa, BLASTP E(): 2e-16. (121 aa)
BF2345.4Hypothetical protein. (118 aa)
BF2462Conserved hypothetical protein related to phage; Similar to pir:A97134, percent identity 34 in 94 aa, BLASTP E(): 2e-07. (111 aa)
BF2472Putative recombination protein; Similar to gp:BAA560763_22 [Bacteriophage Aaphi23], percent identity 36 in 146 aa, BLASTP E(): 2e-09. (145 aa)
BF2482Hypothetical protein. (62 aa)
BF2488Phosphoglycerate mutase; Similar to gpu:AE017174_135 [Porphyromonas gingivalis W83], percent identity 59 in 178 aa, BLASTP E(): 2e-60. (248 aa)
cas2Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (87 aa)
cas1Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (337 aa)
BF2545Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (170 aa)
BF2550Conserved hypothetical protein; Similar to gpu:AE017178_259 [Porphyromonas gingivalis W83], percent identity 35 in 223 aa, BLASTP E(): 6e-38. (223 aa)
BF2560Exodeoxyribonuclease; Similar to gp:AE016928_143 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 252 aa, BLASTP E(): e-139. (253 aa)
BF2611Putative transcription regulator; Similar to gp:AE016928_92 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 157 aa, BLASTP E(): 2e-72; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa)
BF2612Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (942 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (677 aa)
BF2640Putative glycerophosphodiester phosphodiesterase; Similar to gp:AE016928_63 [Bacteroides thetaiotaomicron VPI-5482], percent identity 67 in 243 aa, BLASTP E(): 2e-91. (253 aa)
BF2934Conserved hypothetical protein; Similar to gp:AE016929_90 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 125 aa, BLASTP E(): 8e-53. (142 aa)
BF29392',3'-cyclic nucleotide 2'-phosphodiesterase; Similar to gp:AP003192_126 [Clostridium perfringens str. 13], percent identity 32 in 492 aa, BLASTP E(): 1e-53; Belongs to the 5'-nucleotidase family. (545 aa)
BF2944Conserved hypothetical protein; Similar to gp:AE016946_117 [Bacteroides thetaiotaomicron VPI-5482], percent identity 32 in 107 aa, BLASTP E(): 2e-07. (132 aa)
BF2952Hypothetical protein. (112 aa)
BF2980DNA polymerase III epsilon chain; Similar to gp:AE016931_154 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 255 aa, BLASTP E(): e-131. (257 aa)
BF2981DNA polymerase III beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] (374 aa)
BF3079Hypothetical protein. (219 aa)
BF3083Arsenate reductase; Similar to gp:AE016926_115 [Bacteroides thetaiotaomicron VPI-5482], percent identity 33 in 142 aa, BLASTP E(): 9e-21; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (157 aa)
BF3117Putative protein-tyrosine phosphatase; Similar to gp:AL935260_23 [Lactobacillus plantarum WCFS1], percent identity 36 in 253 aa, BLASTP E(): 9e-31. (240 aa)
hisBHistidine biosynthesis bifunctional protein HisB; Similar to gp:AE016926_203 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 374 aa, BLASTP E(): 0.0; In the N-terminal section; belongs to the histidinol- phosphatase family. (374 aa)
BF3247Putative sulfatase; Similar to gp:AE016932_160 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 528 aa, BLASTP E(): 0.0. (528 aa)
BF3248Arylsulfatase precursor; Similar to gp:AE016932_168 [Bacteroides thetaiotaomicron VPI-5482], percent identity 43 in 527 aa, BLASTP E(): e-108. (488 aa)
BF3255N-acetylgalactosamine-6-sulfatase precursor; Similar to gp:AE016932_154 [Bacteroides thetaiotaomicron VPI-5482], percent identity 76 in 479 aa, BLASTP E(): 0.0. (504 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (169 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (225 aa)
BF3282Putative hydrolase; Similar to gp:AE016932_209 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 173 aa, BLASTP E(): 1e-83. (173 aa)
BF3320Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (927 aa)
BF3379Putative integral membrane protein; Similar to gp:AE016933_100 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 566 aa, BLASTP E(): 0.0. (566 aa)
BF3431Putative sulfatase; Similar to gp:AE016933_140 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 586 aa, BLASTP E(): 0.0. (586 aa)
BF3491Two-component system sensor histidine kinase/response regulator hybrid; Similar to gp:AE016940_3 [Bacteroides thetaiotaomicron VPI-5482], percent identity 57 in 1333 aa, BLASTP E(): 0.0. (1355 aa)
BF3493Sialic acid-specific 9-O-acetylesterase; Similar to gp:AE016943_136 [Bacteroides thetaiotaomicron VPI-5482], percent identity 55 in 659 aa, BLASTP E(): 0.0. (654 aa)
rnyHD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (511 aa)
BF3628Conserved hypothetical protein; Similar to gp:AE016942_18 [Bacteroides thetaiotaomicron VPI-5482], percent identity 27 in 281 aa, BLASTP E(): 9e-10. (536 aa)
BF3646Putative capsular polysaccharide biosynthesis protein; Similar to gpu:AE017173_146 [Porphyromonas gingivalis W83], percent identity 33 in 183 aa, BLASTP E(): 2e-15. (238 aa)
BF3673Conserved hypothetical protein; Similar to gp:U67553_4 [Methanocaldococcus jannaschii], percent identity 28 in 88 aa, BLASTP E(): 7e-05. (102 aa)
BF3682Type II restriction endonuclease; Similar to pir:H81100, percent identity 42 in 398 aa, BLASTP E(): 5e-78. (396 aa)
BF3683Putative very-short-patch-repair endonuclease; Similar to sp:VSR_NEIMA, percent identity 56 in 118 aa, BLASTP E(): 3e-33. (171 aa)
BF3706Conserved hypothetical protein; Similar to gp:AE016934_89 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 288 aa, BLASTP E(): e-142. (292 aa)
BF3743Putative deoxyribonuclease; Similar to gp:AE016934_137 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 258 aa, BLASTP E(): e-110. (258 aa)
BF3760Acyl-[acyl-carrier-protein] thioesterase; Similar to gp:AE016934_156 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 246 aa, BLASTP E(): e-128. (247 aa)
BF3774Conserved hypothetical protein; Similar to gp:AE016942_18 [Bacteroides thetaiotaomicron VPI-5482], percent identity 59 in 377 aa, BLASTP E(): e-119. (367 aa)
BF3776Conserved hypothetical protein; Similar to gp:AE016942_16 [Bacteroides thetaiotaomicron VPI-5482], percent identity 64 in 506 aa, BLASTP E(): 0.0. (509 aa)
BF3778Conserved hypothetical protein; Similar to gp:AE016938_127 [Bacteroides thetaiotaomicron VPI-5482], percent identity 47 in 302 aa, BLASTP E(): 6e-78. (307 aa)
BF3818Putative HD superfamily hydrolase; Similar to gp:AE016934_215 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 178 aa, BLASTP E(): 1e-71. (178 aa)
BF3847Hypothetical protein. (309 aa)
BF3883Putative DNA mismatch repair protein; Similar to gp:AE016935_26 [Bacteroides thetaiotaomicron VPI-5482], percent identity 78 in 354 aa, BLASTP E(): e-158. (349 aa)
BF3906Conserved hypothetical protein; Similar to gp:AE016942_215 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 144 aa, BLASTP E(): 2e-72. (144 aa)
BF3932single-stranded-DNA-specific exonuclease RecJ; Similar to gp:AE016942_212 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 572 aa, BLASTP E(): 0.0. (572 aa)
BF3948Putative secreted sulfatase ydeN precursor; Similar to gp:BX294151_249 [Pirellula sp.], percent identity 51 in 529 aa, BLASTP E(): e-157. (530 aa)
BF3949Putative secreted sulfatase ydeN precursor; Similar to gp:BX294144_251 [Pirellula sp.], percent identity 44 in 487 aa, BLASTP E(): e-110. (493 aa)
BF3989Conserved hypothetical protein; Similar to gp:AE016928_82 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 234 aa, BLASTP E(): 1e-94. (235 aa)
BF3990Conserved hypothetical protein; Similar to gp:AE016936_208 [Bacteroides thetaiotaomicron VPI-5482], percent identity 46 in 224 aa, BLASTP E(): 3e-48. (249 aa)
BF3998Conserved hypothetical protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (70 aa)
xseAPutative exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (410 aa)
BF4067Conserved hypothetical protein; Similar to gp:BX640446_214 [Bordetella bronchiseptica], percent identity 43 in 93 aa, BLASTP E(): 1e-17. (97 aa)
BF4093Putative DNA polymerase III delta subunit; Similar to gp:AE016942_93 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 374 aa, BLASTP E(): 0.0. (369 aa)
BF4137Putative periplasmic protein; Similar to gp:AE016937_22 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 278 aa, BLASTP E(): e-118. (309 aa)
BF4138Putative periplasmic protein; Similar to gp:AE016937_23 [Bacteroides thetaiotaomicron VPI-5482], percent identity 80 in 461 aa, BLASTP E(): 0.0. (457 aa)
BF4208Putative protein-tyrosine phosphatase; Similar to gp:AE016937_90 [Bacteroides thetaiotaomicron VPI-5482], percent identity 94 in 155 aa, BLASTP E(): 1e-83; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (157 aa)
BF4236Hypothetical protein. (118 aa)
BF4260Putative reverse transcriptase; Similar to gp:AP005372_276 [Thermosynechococcus elongatus BP-1], percent identity 54 in 129 aa, BLASTP E(): 2e-29. (116 aa)
BF4261Hypothetical protein; Similar to gp:AE016935_144 [Bacteroides thetaiotaomicron VPI-5482], percent identity 60 in 65 aa, BLASTP E(): 9e-18. (65 aa)
BF4291Hypothetical protein; Similar to gp:AE016930_211 [Bacteroides thetaiotaomicron VPI-5482], percent identity 54 in 213 aa, BLASTP E(): 2e-62. (843 aa)
BF4389Inositol-1-monophosphatase; Similar to gp:AE016937_141 [Bacteroides thetaiotaomicron VPI-5482], percent identity 78 in 266 aa, BLASTP E(): e-123; Belongs to the inositol monophosphatase superfamily. (268 aa)
BF4444Putative glycerophosphoryl diester phosphodiesterase; Similar to pir:A96213, percent identity 36 in 238 aa, BLASTP E(): 3e-30. (253 aa)
BF4472Arylsulfatase precursor; Similar to gp:AE016932_168 [Bacteroides thetaiotaomicron VPI-5482], percent identity 79 in 510 aa, BLASTP E(): 0.0. (513 aa)
BF4541Acid phosphatase; Similar to gp:AE016938_121 [Bacteroides thetaiotaomicron VPI-5482], percent identity 82 in 310 aa, BLASTP E(): e-157. (310 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (714 aa)
leuSleucyl-tRNA synthetase; Similar to gp:AE016939_36 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 944 aa, BLASTP E(): 0.0; Belongs to the class-I aminoacyl-tRNA synthetase family. (943 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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