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dapA dapA BF3793 BF3793 BF3940 BF3940 BF0182 BF0182 BF0372 BF0372 asd asd BF1706 BF1706
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (297 aa)
BF3793Putative succinyl-diaminopimelate desuccinylase; Similar to gp:AE016934_166 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 454 aa, BLASTP E(): 0.0. (454 aa)
BF3940Putative N-acetylneuraminate lyase; Similar to gpu:AP005349_74 [Vibrio vulnificus YJ016], percent identity 41 in 297 aa, BLASTP E(): 3e-64. (302 aa)
BF0182Dihydrodipicolinate reductase; Similar to gp:AE016940_21 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 254 aa, BLASTP E(): e-119; Belongs to the DapB family. (242 aa)
BF0372Acetylornithine deacetylase; Similar to gp:AE016941_36 [Bacteroides thetaiotaomicron VPI-5482], percent identity 86 in 349 aa, BLASTP E(): e-178. (353 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (336 aa)
BF1706Probable N-acetylneuraminate lyase; Similar to pir:AG0367, percent identity 37 in 286 aa, BLASTP E(): 4e-50; Belongs to the DapA family. (305 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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