STRINGSTRING
atpB atpB BF0212 BF0212 BF0340 BF0340 BF0375 BF0375 BF0394 BF0394 BF0407 BF0407 BF0587 BF0587 BF0634 BF0634 BF0668 BF0668 BF0725 BF0725 nuoC nuoC tatC tatC tatA tatA BF1462 BF1462 BF1482 BF1482 BF1559 BF1559 BF1569 BF1569 BF1636 BF1636 BF1644 BF1644 BF1739 BF1739 BF1740 BF1740 BF1752 BF1752 BF1924 BF1924 BF2138 BF2138 atpD atpD BF2172 BF2172 atpE atpE atpF atpF atpH atpH atpA atpA atpG atpG BF2289 BF2289 BF2499 BF2499 BF2627 BF2627 BF2628 BF2628 potA potA BF2728 BF2728 BF2729 BF2729 BF2730 BF2730 BF2731 BF2731 atpA-2 atpA-2 BF2733 BF2733 BF2734 BF2734 BF2962 BF2962 BF3029 BF3029 BF3235 BF3235 BF3254 BF3254 BF3271 BF3271 BF3307 BF3307 BF3334 BF3334 BF3785 BF3785 BF3939 BF3939 BF3971 BF3971 BF3986 BF3986 BF3987 BF3987 BF4083 BF4083 BF4084 BF4084 BF4104 BF4104 BF4297 BF4297 BF4555 BF4555 BF4556 BF4556
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atpBATP synthase A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. (383 aa)
BF0212Hypothetical protein. (361 aa)
BF0340Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016942_127 [Bacteroides thetaiotaomicron VPI-5482], percent identity 35 in 1034 aa, BLASTP E(): e-168. (1067 aa)
BF0375Polyphosphate-selective porin O; Similar to gp:AE012370_13 [Xanthomonas campestris pv. campestris str. ATCC 33913], percent identity 27 in 373 aa, BLASTP E(): 6e-25. (439 aa)
BF0394Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016941_56 [Bacteroides thetaiotaomicron VPI-5482], percent identity 82 in 1022 aa, BLASTP E(): 0.0. (1022 aa)
BF0407Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016935_211 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 1014 aa, BLASTP E(): 0.0. (1019 aa)
BF0587Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AF329100_8 [Bacteroides fragilis NCTC9343], percent identity 100 in 495 aa, BLASTP E(): 0.0. (495 aa)
BF0634Hypothetical protein; Similar to gp:SCO939123_109 [Streptomyces coelicolor A3(2)], percent identity 40 in 90 aa, BLASTP E(): 3e-15. (216 aa)
BF0668Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016935_211 [Bacteroides thetaiotaomicron VPI-5482], percent identity 46 in 954 aa, BLASTP E(): 0.0. (932 aa)
BF0725Zinc ABC transporter permease; Similar to gp:AE016935_53 [Bacteroides thetaiotaomicron VPI-5482], percent identity 85 in 268 aa, BLASTP E(): e-126. (269 aa)
nuoCNADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); In the N-terminal section; belongs to the complex I 30 kDa subunit family. (530 aa)
tatCPutative Sec-independent protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (264 aa)
tatAPutative Sec-independent protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (75 aa)
BF1462Conserved hypothetical protein; Similar to gp:AE016932_105 [Bacteroides thetaiotaomicron VPI-5482], percent identity 79 in 429 aa, BLASTP E(): 0.0. (429 aa)
BF1482Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016935_43 [Bacteroides thetaiotaomicron VPI-5482], percent identity 29 in 1154 aa, BLASTP E(): e-144. (1131 aa)
BF1559Conserved hypothetical protein; Similar to gp:AE016931_38 [Bacteroides thetaiotaomicron VPI-5482], percent identity 29 in 522 aa, BLASTP E(): 7e-47. (775 aa)
BF1569Outer membrane vitamin B12 receptor protein; Similar to gp:AE016932_21 [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 667 aa, BLASTP E(): 0.0. (678 aa)
BF1636Conserved hypothetical protein; Similar to gp:AE016927_56 [Bacteroides thetaiotaomicron VPI-5482], percent identity 63 in 303 aa, BLASTP E(): e-104. (297 aa)
BF1644Conserved hypothetical protein; Similar to gp:AE016927_61 [Bacteroides thetaiotaomicron VPI-5482], percent identity 72 in 682 aa, BLASTP E(): 0.0. (680 aa)
BF1739Putative outer membrane protein involved in nutrient binding; Similar to gp:AE016927_216 [Bacteroides thetaiotaomicron VPI-5482], percent identity 84 in 917 aa, BLASTP E(): 0.0. (914 aa)
BF1740Putative outer membrane protein involved in nutrient binding; Similar to gp:AE016927_217 [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 543 aa, BLASTP E(): 0.0. (543 aa)
BF1752Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016938_194 [Bacteroides thetaiotaomicron VPI-5482], percent identity 32 in 1063 aa, BLASTP E(): e-136. (1048 aa)
BF1924Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016939_149 [Bacteroides thetaiotaomicron VPI-5482], percent identity 41 in 1074 aa, BLASTP E(): 0.0. (1125 aa)
BF2138Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016932_84 [Bacteroides thetaiotaomicron VPI-5482], percent identity 58 in 1115 aa, BLASTP E(): 0.0. (1101 aa)
atpDATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (505 aa)
BF2172ATP synthase epsilon chain; Similar to gp:AE016928_225 [Bacteroides thetaiotaomicron VPI-5482], percent identity 79 in 81 aa, BLASTP E(): 1e-29. (81 aa)
atpEATP synthase C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (85 aa)
atpFATP synthase B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (165 aa)
atpHATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (186 aa)
atpAATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (527 aa)
atpGATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (290 aa)
BF2289Putative polyphosphate-selective porin O; Similar to gp:AE011995_2 [Xanthomonas axonopodis pv. citri str. 306], percent identity 23 in 374 aa, BLASTP E(): 1e-18. (380 aa)
BF2499Conserved hypothetical protein; Similar to gp:AE016929_226 [Bacteroides thetaiotaomicron VPI-5482], percent identity 79 in 388 aa, BLASTP E(): e-178. (390 aa)
BF2627Putative ABC transporter permease protein; Similar to gp:AE016928_77 [Bacteroides thetaiotaomicron VPI-5482], percent identity 71 in 371 aa, BLASTP E(): e-152. (372 aa)
BF2628Putative ABC transporter ATP-binding protein or permease protein; Similar to gp:AE016928_76 [Bacteroides thetaiotaomicron VPI-5482], percent identity 80 in 366 aa, BLASTP E(): e-165. (366 aa)
potASpermidine/putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (470 aa)
BF2728V-type sodium ATP synthase subunit K; Similar to gp:AE016931_86 [Bacteroides thetaiotaomicron VPI-5482], percent identity 99 in 153 aa, BLASTP E(): 2e-78. (153 aa)
BF2729V-type ATP synthase subunit I; Similar to gp:AE016931_87 [Bacteroides thetaiotaomicron VPI-5482], percent identity 85 in 600 aa, BLASTP E(): 0.0; Belongs to the V-ATPase 116 kDa subunit family. (605 aa)
BF2730V-type ATP synthase subunit D; Similar to gp:AE016931_88 [Bacteroides thetaiotaomicron VPI-5482], percent identity 94 in 201 aa, BLASTP E(): e-103. (201 aa)
BF2731V-type ATP synthase subunit B; Similar to gp:AE016931_89 [Bacteroides thetaiotaomicron VPI-5482], percent identity 97 in 439 aa, BLASTP E(): 0.0. (439 aa)
atpA-2V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (585 aa)
BF2733Conserved hypothetical protein; Similar to gp:AE016931_91 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 278 aa, BLASTP E(): e-138. (279 aa)
BF2734ATP synthase subunit E; Similar to gp:AE016931_92 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 196 aa, BLASTP E(): 3e-95. (196 aa)
BF2962Probable TonB-dependent outer membrane protein; Similar to gpu:AP005345_63 [Vibrio vulnificus YJ016], percent identity 28 in 225 aa, BLASTP E(): 6e-14. (788 aa)
BF3029Putative TonB-dependent outer membrane receptor; Similar to gp:AE016934_34 [Bacteroides thetaiotaomicron VPI-5482], percent identity 100 in 692 aa, BLASTP E(): 0.0. (692 aa)
BF3235Probable outer membrane receptor protein; Similar to gpu:AE017179_179 [Porphyromonas gingivalis W83], percent identity 24 in 613 aa, BLASTP E(): 1e-34. (680 aa)
BF3254Putative molybdenum transport ATP-binding protein; Similar to gp:AE016932_194 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 484 aa, BLASTP E(): 0.0. (484 aa)
BF3271Conserved hypothetical protein; Similar to gp:AE016932_206 [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 349 aa, BLASTP E(): e-150. (345 aa)
BF3307Outer membrane protein probably involved in nutrient binding; Similar to gp:AE016941_188 [Bacteroides thetaiotaomicron VPI-5482], percent identity 50 in 1016 aa, BLASTP E(): 0.0. (1002 aa)
BF3334Glycine betaine-binding protein precursor; Similar to gp:AE016933_36 [Bacteroides thetaiotaomicron VPI-5482], percent identity 65 in 266 aa, BLASTP E(): e-102. (284 aa)
BF3785Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016943_84 [Bacteroides thetaiotaomicron VPI-5482], percent identity 85 in 1033 aa, BLASTP E(): 0.0. (1071 aa)
BF3939Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016946_109 [Bacteroides thetaiotaomicron VPI-5482], percent identity 27 in 1111 aa, BLASTP E(): e-109. (1098 aa)
BF3971Putative outer membrane protein probably involved in nutrient binding; Similar to gp:AE016935_43 [Bacteroides thetaiotaomicron VPI-5482], percent identity 35 in 1156 aa, BLASTP E(): 0.0. (1146 aa)
BF3986Conserved hypothetical protein; Similar to gp:AE016942_176 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 393 aa, BLASTP E(): 0.0. (393 aa)
BF3987Conserved hypothetical protein; Similar to gp:AE016942_175 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 410 aa, BLASTP E(): 0.0. (416 aa)
BF4083ABC transporter ATP-binding protein; Similar to gp:AE016942_110 [Bacteroides thetaiotaomicron VPI-5482], percent identity 98 in 251 aa, BLASTP E(): e-135. (253 aa)
BF4084Conserved hypothetical protein; Similar to gp:AE016942_111 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 247 aa, BLASTP E(): e-127. (247 aa)
BF4104Conserved hypothetical protein; Similar to gp:AE016944_180 [Bacteroides thetaiotaomicron VPI-5482], percent identity 27 in 673 aa, BLASTP E(): 6e-57. (796 aa)
BF4297Putative TonB-dependent outer membrane receptor; Similar to gp:AE016929_230 [Bacteroides thetaiotaomicron VPI-5482], percent identity 69 in 613 aa, BLASTP E(): 0.0. (765 aa)
BF4555Hypothetical protein. (406 aa)
BF4556Putative TonB-dependent outer membrane protein; Similar to gp:AE016934_146 [Bacteroides thetaiotaomicron VPI-5482], percent identity 39 in 792 aa, BLASTP E(): e-151. (805 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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