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BF4017 BF4017 BF2540 BF2540 BF1141 BF1141 BF0489 BF0489 BF4117 BF4117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BF4017Ribosomal large subunit pseudouridine synthase B; Similar to gp:AE016942_145 [Bacteroides thetaiotaomicron VPI-5482], percent identity 74 in 529 aa, BLASTP E(): 0.0; Belongs to the pseudouridine synthase RsuA family. (466 aa)
BF2540RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (307 aa)
BF1141Ribosomal large subunit pseudouridine synthase A; Similar to gp:AE016945_145 [Bacteroides thetaiotaomicron VPI-5482], percent identity 63 in 549 aa, BLASTP E(): 0.0. (539 aa)
BF0489Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (357 aa)
BF4117Ribosomal large subunit pseudouridine synthase D; Similar to gp:AE016942_45 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 221 aa, BLASTP E(): e-115. (221 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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