STRINGSTRING
nusA nusA rnr rnr pnp pnp infA infA BF1806 BF1806 BF1552 BF1552 BF1043 BF1043 BF0542 BF0542
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nusAPutative nitrogen utilization substance protein; Participates in both transcription termination and antitermination. (420 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (714 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (708 aa)
infATranslation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
BF1806Putative RNA binding protein with S1 RNA-binding domain; Similar to gp:AE016931_29 [Bacteroides thetaiotaomicron VPI-5482], percent identity 82 in 704 aa, BLASTP E(): 0.0. (707 aa)
BF1552Similar to gp:AE016932_32 [Bacteroides thetaiotaomicron VPI-5482], percent identity 94 in 524 aa, BLASTP E(): 0.0. (524 aa)
BF104330S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (597 aa)
BF0542Conserved hypothetical protein; Similar to gp:AE016936_92 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 276 aa, BLASTP E(): e-132; Belongs to the CvfB family. (282 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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