STRINGSTRING
BF0764 BF0764 BF4207 BF4207 BF3818 BF3818 BF3640 BF3640 rny rny BF2708 BF2708 BF0908 BF0908 BF0323 BF0323
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BF0764GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (747 aa)
BF4207Putative membrane-associated HD superfamily hydrolase; Similar to gp:AE016937_89 [Bacteroides thetaiotaomicron VPI-5482], percent identity 84 in 690 aa, BLASTP E(): 0.0. (685 aa)
BF3818Putative HD superfamily hydrolase; Similar to gp:AE016934_215 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 178 aa, BLASTP E(): 1e-71. (178 aa)
BF3640tRNA nucleotidyltransferase; Similar to gp:AE016934_56 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 477 aa, BLASTP E(): 0.0; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (481 aa)
rnyHD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (511 aa)
BF2708Conserved hypothetical protein; Similar to gp:AE016765_97 [Escherichia coli CFT073], percent identity 54 in 370 aa, BLASTP E(): e-115. (370 aa)
BF0908Phosphohydrolase; Similar to gp:AE016944_64 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 409 aa, BLASTP E(): 0.0. (409 aa)
BF0323dGTP triphosphohydrolase; Similar to gp:AE016940_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 84 in 450 aa, BLASTP E(): 0.0. (451 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.