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tyrS tyrS cysS cysS glyQS glyQS alaS alaS BF1007 BF1007 valS valS thrS thrS ileS ileS aspS aspS proS proS pheT pheT BF2758 BF2758 pheS pheS hisS hisS lysS lysS fmt fmt asnS asnS BF4036 BF4036 gltX gltX argS argS metG metG leuS leuS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (430 aa)
cysScysteinyl-tRNA synthetase; Similar to gp:AE016940_52 [Bacteroides thetaiotaomicron VPI-5482], percent identity 89 in 493 aa, BLASTP E(): 0.0; Belongs to the class-I aminoacyl-tRNA synthetase family. (491 aa)
glyQSglycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (513 aa)
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (872 aa)
BF1007seryl-tRNA synthetase; Similar to gp:AE016944_168 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 424 aa, BLASTP E(): 0.0. (424 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa)
thrSthreonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). (646 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1141 aa)
aspSaspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (585 aa)
proSprolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (497 aa)
pheTphenylalanyl-tRNA synthetase beta chain; Similar to gp:AE016928_139 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 820 aa, BLASTP E(): 0.0; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (820 aa)
BF2758glutaminyl-tRNA synthetase; Similar to gp:AE016931_116 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 579 aa, BLASTP E(): 0.0. (582 aa)
pheSphenylalanyl-tRNA synthetase alpha chain; Similar to gp:AE016932_201 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 339 aa, BLASTP E(): 0.0; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (339 aa)
hisShistidyl-tRNA synthetase; Similar to sp:SYH_BACTN [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 452 aa, BLASTP E(): 0.0. (454 aa)
lysSlysyl-tRNA synthetase; Similar to gp:AE016934_203 [Bacteroides thetaiotaomicron VPI-5482], percent identity 82 in 576 aa, BLASTP E(): 0.0; Belongs to the class-II aminoacyl-tRNA synthetase family. (575 aa)
fmtmethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (324 aa)
asnSasparaginyl-tRNA synthetase; Similar to gp:AE016942_146 [Bacteroides thetaiotaomicron VPI-5482], percent identity 94 in 467 aa, BLASTP E(): 0.0. (467 aa)
BF4036tryptophanyl-tRNA synthetase; Similar to gp:AE016942_137 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 361 aa, BLASTP E(): 0.0; Belongs to the class-I aminoacyl-tRNA synthetase family. (363 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (505 aa)
argSarginyl-tRNA synthetase; Similar to gp:AE016937_169 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 597 aa, BLASTP E(): 0.0. (597 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (654 aa)
leuSleucyl-tRNA synthetase; Similar to gp:AE016939_36 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 944 aa, BLASTP E(): 0.0; Belongs to the class-I aminoacyl-tRNA synthetase family. (943 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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