19 items (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZOSMA_94G00100	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (416 aa)
	ZOSMA_89G00570	Ribosomal protein S12, mitochondrial; Belongs to the universal ribosomal protein uS12 family. (169 aa)
	ZOSMA_85G00340	39S ribosomal protein L41-A, mitochondrial. (95 aa)
	ZOSMA_60G00320	Mitochondrial ribosomal protein L43. (120 aa)
	ZOSMA_53G00490	30S ribosomal protein S18 family; Belongs to the bacterial ribosomal protein bS18 family. (316 aa)
	A0A0K9P1W0	Mitochondrial 28S ribosomal protein S29-like protein. (469 aa)
	ZOSMA_3G02060	50S ribosomal protein L34. (155 aa)
	ZOSMA_42G00260	Uncharacterized protein. (257 aa)
	A0A0K9P542	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (394 aa)
	ZOSMA_32G00190	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family. (248 aa)
	A0A0K9PID2	30S ribosomal protein S16. (75 aa)
	ZOSMA_22G00510	Trigger_N domain-containing protein. (212 aa)
	ZOSMA_1G02040	Ribosomal protein S14, mitochondrial. (99 aa)
	ZOSMA_20G00500	50S ribosomal protein L25. (277 aa)
	A0A0K9PP07	50S ribosomal protein L23. (199 aa)
	A0A0K9PQP9	Uncharacterized protein. (99 aa)
	ZOSMA_15G01000	Mitochondrial ribosomal protein L37. (128 aa)
	A0A0K9Q337	MRP-S28 domain-containing protein. (413 aa)
	ZOSMA_10G00750	Ribosomal protein S2, mitochondrial. (214 aa)

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P1W0	A0A0K9P542	A0A0K9P1W0	A0A0K9P542	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.996
A0A0K9P1W0	A0A0K9PID2	A0A0K9P1W0	A0A0K9PID2	Mitochondrial 28S ribosomal protein S29-like protein.	30S ribosomal protein S16.	0.978
A0A0K9P1W0	A0A0K9PP07	A0A0K9P1W0	A0A0K9PP07	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L23.	0.989
A0A0K9P1W0	A0A0K9PQP9	A0A0K9P1W0	A0A0K9PQP9	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein.	0.979
A0A0K9P1W0	A0A0K9Q337	A0A0K9P1W0	A0A0K9Q337	Mitochondrial 28S ribosomal protein S29-like protein.	MRP-S28 domain-containing protein.	0.999
A0A0K9P1W0	ZOSMA_10G00750	A0A0K9P1W0	A0A0K9Q5L0	Mitochondrial 28S ribosomal protein S29-like protein.	Ribosomal protein S2, mitochondrial.	0.996
A0A0K9P1W0	ZOSMA_15G01000	A0A0K9P1W0	A0A0K9PUU2	Mitochondrial 28S ribosomal protein S29-like protein.	Mitochondrial ribosomal protein L37.	0.975
A0A0K9P1W0	ZOSMA_1G02040	A0A0K9P1W0	A0A0K9PMQ2	Mitochondrial 28S ribosomal protein S29-like protein.	Ribosomal protein S14, mitochondrial.	0.982
A0A0K9P1W0	ZOSMA_20G00500	A0A0K9P1W0	A0A0K9PMX1	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L25.	0.989
A0A0K9P1W0	ZOSMA_22G00510	A0A0K9P1W0	A0A0K9PKK5	Mitochondrial 28S ribosomal protein S29-like protein.	Trigger_N domain-containing protein.	0.999
A0A0K9P1W0	ZOSMA_32G00190	A0A0K9P1W0	A0A0K9PAN2	Mitochondrial 28S ribosomal protein S29-like protein.	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.986
A0A0K9P1W0	ZOSMA_3G02060	A0A0K9P1W0	A0A0K9P3V5	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L34.	0.974
A0A0K9P1W0	ZOSMA_42G00260	A0A0K9P1W0	A0A0K9P467	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein.	0.988
A0A0K9P1W0	ZOSMA_53G00490	A0A0K9P1W0	A0A0K9NWY4	Mitochondrial 28S ribosomal protein S29-like protein.	30S ribosomal protein S18 family; Belongs to the bacterial ribosomal protein bS18 family.	0.998
A0A0K9P1W0	ZOSMA_60G00320	A0A0K9P1W0	A0A0K9NTY4	Mitochondrial 28S ribosomal protein S29-like protein.	Mitochondrial ribosomal protein L43.	0.977
A0A0K9P1W0	ZOSMA_85G00340	A0A0K9P1W0	A0A0K9NL19	Mitochondrial 28S ribosomal protein S29-like protein.	39S ribosomal protein L41-A, mitochondrial.	0.961
A0A0K9P1W0	ZOSMA_89G00570	A0A0K9P1W0	A0A0K9NK28	Mitochondrial 28S ribosomal protein S29-like protein.	Ribosomal protein S12, mitochondrial; Belongs to the universal ribosomal protein uS12 family.	0.988
A0A0K9P1W0	ZOSMA_94G00100	A0A0K9P1W0	A0A0K9NI91	Mitochondrial 28S ribosomal protein S29-like protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.998
A0A0K9P542	A0A0K9P1W0	A0A0K9P542	A0A0K9P1W0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial 28S ribosomal protein S29-like protein.	0.996
A0A0K9P542	A0A0K9PID2	A0A0K9P542	A0A0K9PID2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S16.	0.991