22 items (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0K9PSD7	50S ribosomal protein L34, chloroplastic. (137 aa)
	ZOSMA_15G01000	Mitochondrial ribosomal protein L37. (128 aa)
	A0A0K9Q5C4	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (167 aa)
	A0A0K9PBX2	54S ribosomal protein L4, mitochondrial. (141 aa)
	A0A0K9PCD6	50S ribosomal protein L28. (153 aa)
	A0A0K9PCG1	Ribosomal_L2 domain-containing protein. (190 aa)
	ZOSMA_85G00340	39S ribosomal protein L41-A, mitochondrial. (95 aa)
	ZOSMA_23G00460	Putative 50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (168 aa)
	ZOSMA_7G00100	Putative 50S ribosomal protein L13. (215 aa)
	ZOSMA_63G00250	50S ribosomal protein L28. (189 aa)
	ZOSMA_60G00320	Mitochondrial ribosomal protein L43. (120 aa)
	ZOSMA_47G00670	Putative 50S ribosomal protein L2. (235 aa)
	ZOSMA_3G02060	50S ribosomal protein L34. (155 aa)
	ZOSMA_42G00260	Uncharacterized protein. (257 aa)
	ZOSMA_38G00730	50S ribosomal protein L15, putative, expressed. (267 aa)
	ZOSMA_29G01120	54S ribosomal protein L4, mitochondrial. (141 aa)
	A0A0K9PHF7	Uncharacterized protein. (275 aa)
	ZOSMA_25G01170	39S ribosomal protein L41-A, mitochondrial. (94 aa)
	A0A0K9PHT5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (276 aa)
	ZOSMA_20G01110	Uncharacterized protein. (123 aa)
	A0A0K9PP07	50S ribosomal protein L23. (199 aa)
	ZOSMA_1G02470	Uncharacterized protein. (106 aa)

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PBX2	A0A0K9PCD6	A0A0K9PBX2	A0A0K9PCD6	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L28.	0.844
A0A0K9PBX2	A0A0K9PCG1	A0A0K9PBX2	A0A0K9PCG1	54S ribosomal protein L4, mitochondrial.	Ribosomal_L2 domain-containing protein.	0.823
A0A0K9PBX2	A0A0K9PHF7	A0A0K9PBX2	A0A0K9PHF7	54S ribosomal protein L4, mitochondrial.	Uncharacterized protein.	0.865
A0A0K9PBX2	A0A0K9PHT5	A0A0K9PBX2	A0A0K9PHT5	54S ribosomal protein L4, mitochondrial.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.938
A0A0K9PBX2	A0A0K9PP07	A0A0K9PBX2	A0A0K9PP07	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L23.	0.987
A0A0K9PBX2	A0A0K9Q5C4	A0A0K9PBX2	A0A0K9Q5C4	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.952
A0A0K9PBX2	ZOSMA_15G01000	A0A0K9PBX2	A0A0K9PUU2	54S ribosomal protein L4, mitochondrial.	Mitochondrial ribosomal protein L37.	0.973
A0A0K9PBX2	ZOSMA_1G02470	A0A0K9PBX2	A0A0K9PPW1	54S ribosomal protein L4, mitochondrial.	Uncharacterized protein.	0.754
A0A0K9PBX2	ZOSMA_20G01110	A0A0K9PBX2	A0A0K9PKS3	54S ribosomal protein L4, mitochondrial.	Uncharacterized protein.	0.736
A0A0K9PBX2	ZOSMA_23G00460	A0A0K9PBX2	A0A0K9PHC8	54S ribosomal protein L4, mitochondrial.	Putative 50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	0.868
A0A0K9PBX2	ZOSMA_25G01170	A0A0K9PBX2	A0A0K9PHM0	54S ribosomal protein L4, mitochondrial.	39S ribosomal protein L41-A, mitochondrial.	0.929
A0A0K9PBX2	ZOSMA_38G00730	A0A0K9PBX2	A0A0K9P4N2	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L15, putative, expressed.	0.907
A0A0K9PBX2	ZOSMA_3G02060	A0A0K9PBX2	A0A0K9P3V5	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L34.	0.935
A0A0K9PBX2	ZOSMA_42G00260	A0A0K9PBX2	A0A0K9P467	54S ribosomal protein L4, mitochondrial.	Uncharacterized protein.	0.976
A0A0K9PBX2	ZOSMA_47G00670	A0A0K9PBX2	A0A0K9NZX8	54S ribosomal protein L4, mitochondrial.	Putative 50S ribosomal protein L2.	0.823
A0A0K9PBX2	ZOSMA_60G00320	A0A0K9PBX2	A0A0K9NTY4	54S ribosomal protein L4, mitochondrial.	Mitochondrial ribosomal protein L43.	0.941
A0A0K9PBX2	ZOSMA_63G00250	A0A0K9PBX2	A0A0K9NTF4	54S ribosomal protein L4, mitochondrial.	50S ribosomal protein L28.	0.936
A0A0K9PBX2	ZOSMA_7G00100	A0A0K9PBX2	A0A0K9NMJ8	54S ribosomal protein L4, mitochondrial.	Putative 50S ribosomal protein L13.	0.931
A0A0K9PBX2	ZOSMA_85G00340	A0A0K9PBX2	A0A0K9NL19	54S ribosomal protein L4, mitochondrial.	39S ribosomal protein L41-A, mitochondrial.	0.929
A0A0K9PCD6	A0A0K9PBX2	A0A0K9PCD6	A0A0K9PBX2	50S ribosomal protein L28.	54S ribosomal protein L4, mitochondrial.	0.844