32 items (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZOSMA_78G00660	Ribosome biogenesis GTPase A. (370 aa)
	ZOSMA_89G00110	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (458 aa)
	GATB	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (554 aa)
	ZOSMA_89G00100	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (458 aa)
	ZOSMA_87G00610	Ribosome biogenesis GTPase A. (378 aa)
	ZOSMA_85G00250	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (952 aa)
	ZOSMA_85G01260	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (782 aa)
	ZOSMA_63G00250	50S ribosomal protein L28. (189 aa)
	ZOSMA_60G00320	Mitochondrial ribosomal protein L43. (120 aa)
	ZOSMA_66G00600	Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (1075 aa)
	ZOSMA_47G00670	Putative 50S ribosomal protein L2. (235 aa)
	A0A0K9P1W0	Mitochondrial 28S ribosomal protein S29-like protein. (469 aa)
	A0A0K9P2U2	Putative Pentatricopeptide repeat-containing protein. (714 aa)
	ZOSMA_43G00220	Ribosome biogenesis GTPase A. (361 aa)
	ZOSMA_42G00260	Uncharacterized protein. (257 aa)
	ZOSMA_42G01190	Uncharacterized protein. (280 aa)
	ZOSMA_33G01060	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (744 aa)
	A0A0K9P878	Glycine--tRNA ligase. (725 aa)
	A0A0K9P882	Histidine--tRNA ligase. (922 aa)
	ZOSMA_29G01120	54S ribosomal protein L4, mitochondrial. (141 aa)
	A0A0K9PBX2	54S ribosomal protein L4, mitochondrial. (141 aa)
	A0A0K9PCG1	Ribosomal_L2 domain-containing protein. (190 aa)
	GATA	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). (551 aa)
	A0A0K9PNT7	CX9C domain-containing protein. (76 aa)
	A0A0K9PP07	50S ribosomal protein L23. (199 aa)
	A0A0K9PQP9	Uncharacterized protein. (99 aa)
	A0A0K9PRB6	Uncharacterized protein. (52 aa)
	A0A0K9PVJ4	Iron-sulfur protein NUBPL. (298 aa)
	A0A0K9Q087	Serine--tRNA ligase. (514 aa)
	A0A0K9Q337	MRP-S28 domain-containing protein. (413 aa)
	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family. (134 aa)
	A0A0K9Q5C4	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (167 aa)

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P1W0	A0A0K9PBX2	A0A0K9P1W0	A0A0K9PBX2	Mitochondrial 28S ribosomal protein S29-like protein.	54S ribosomal protein L4, mitochondrial.	0.947
A0A0K9P1W0	A0A0K9PCG1	A0A0K9P1W0	A0A0K9PCG1	Mitochondrial 28S ribosomal protein S29-like protein.	Ribosomal_L2 domain-containing protein.	0.874
A0A0K9P1W0	A0A0K9PNT7	A0A0K9P1W0	A0A0K9PNT7	Mitochondrial 28S ribosomal protein S29-like protein.	CX9C domain-containing protein.	0.795
A0A0K9P1W0	A0A0K9PP07	A0A0K9P1W0	A0A0K9PP07	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L23.	0.989
A0A0K9P1W0	A0A0K9PQP9	A0A0K9P1W0	A0A0K9PQP9	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein.	0.979
A0A0K9P1W0	A0A0K9PRB6	A0A0K9P1W0	A0A0K9PRB6	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein.	0.720
A0A0K9P1W0	A0A0K9Q337	A0A0K9P1W0	A0A0K9Q337	Mitochondrial 28S ribosomal protein S29-like protein.	MRP-S28 domain-containing protein.	0.999
A0A0K9P1W0	A0A0K9Q5C4	A0A0K9P1W0	A0A0K9Q5C4	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.984
A0A0K9P1W0	ZOSMA_29G01120	A0A0K9P1W0	A0A0K9PBW3	Mitochondrial 28S ribosomal protein S29-like protein.	54S ribosomal protein L4, mitochondrial.	0.947
A0A0K9P1W0	ZOSMA_33G01060	A0A0K9P1W0	A0A0K9P7V1	Mitochondrial 28S ribosomal protein S29-like protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.810
A0A0K9P1W0	ZOSMA_42G00260	A0A0K9P1W0	A0A0K9P467	Mitochondrial 28S ribosomal protein S29-like protein.	Uncharacterized protein.	0.988
A0A0K9P1W0	ZOSMA_47G00670	A0A0K9P1W0	A0A0K9NZX8	Mitochondrial 28S ribosomal protein S29-like protein.	Putative 50S ribosomal protein L2.	0.874
A0A0K9P1W0	ZOSMA_60G00320	A0A0K9P1W0	A0A0K9NTY4	Mitochondrial 28S ribosomal protein S29-like protein.	Mitochondrial ribosomal protein L43.	0.977
A0A0K9P1W0	ZOSMA_63G00250	A0A0K9P1W0	A0A0K9NTF4	Mitochondrial 28S ribosomal protein S29-like protein.	50S ribosomal protein L28.	0.977
A0A0K9P1W0	ZOSMA_85G01260	A0A0K9P1W0	A0A0K9NNJ1	Mitochondrial 28S ribosomal protein S29-like protein.	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.810
A0A0K9P1W0	ZOSMA_87G00610	A0A0K9P1W0	A0A0K9NMV2	Mitochondrial 28S ribosomal protein S29-like protein.	Ribosome biogenesis GTPase A.	0.599
A0A0K9P1W0	ZOSMA_89G00100	A0A0K9P1W0	A0A0K9NM49	Mitochondrial 28S ribosomal protein S29-like protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.720
A0A0K9P1W0	ZOSMA_89G00110	A0A0K9P1W0	A0A0K9NJX0	Mitochondrial 28S ribosomal protein S29-like protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.720
A0A0K9P878	A0A0K9P882	A0A0K9P878	A0A0K9P882	Glycine--tRNA ligase.	Histidine--tRNA ligase.	0.481
A0A0K9P878	A0A0K9PCG1	A0A0K9P878	A0A0K9PCG1	Glycine--tRNA ligase.	Ribosomal_L2 domain-containing protein.	0.454