(7 nodes) DNA replication initiation network (Micromonas commoda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MICPUN_59616	Uncharacterized protein. (623 aa)
	MICPUN_59630	DNA polymerase. (1643 aa)
	MICPUN_60106	CBFD_NFYB_HMF domain-containing protein. (151 aa)
	MICPUN_101999	DNA_pol_E_B domain-containing protein. (639 aa)
	MICPUN_63095	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2478 aa)
	MICPUN_98146	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (464 aa)
	MICPUN_62930	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (658 aa)

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MICPUN_101999	MICPUN_59616	C1FGI8	C1E962	DNA_pol_E_B domain-containing protein.	Uncharacterized protein.	0.881
MICPUN_101999	MICPUN_59630	C1FGI8	C1E975	DNA_pol_E_B domain-containing protein.	DNA polymerase.	0.982
MICPUN_101999	MICPUN_60106	C1FGI8	C1EAK8	DNA_pol_E_B domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.999
MICPUN_101999	MICPUN_62930	C1FGI8	C1FJN0	DNA_pol_E_B domain-containing protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.951
MICPUN_101999	MICPUN_63095	C1FGI8	C1FJ68	DNA_pol_E_B domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.999
MICPUN_101999	MICPUN_98146	C1FGI8	C1FJE4	DNA_pol_E_B domain-containing protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.921
MICPUN_59616	MICPUN_101999	C1E962	C1FGI8	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.881
MICPUN_59616	MICPUN_59630	C1E962	C1E975	Uncharacterized protein.	DNA polymerase.	0.988
MICPUN_59616	MICPUN_60106	C1E962	C1EAK8	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.759
MICPUN_59616	MICPUN_62930	C1E962	C1FJN0	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.978
MICPUN_59616	MICPUN_63095	C1E962	C1FJ68	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.919
MICPUN_59616	MICPUN_98146	C1E962	C1FJE4	Uncharacterized protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.900
MICPUN_59630	MICPUN_101999	C1E975	C1FGI8	DNA polymerase.	DNA_pol_E_B domain-containing protein.	0.982
MICPUN_59630	MICPUN_59616	C1E975	C1E962	DNA polymerase.	Uncharacterized protein.	0.988
MICPUN_59630	MICPUN_60106	C1E975	C1EAK8	DNA polymerase.	CBFD_NFYB_HMF domain-containing protein.	0.949
MICPUN_59630	MICPUN_62930	C1E975	C1FJN0	DNA polymerase.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.999
MICPUN_59630	MICPUN_63095	C1E975	C1FJ68	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.990
MICPUN_59630	MICPUN_98146	C1E975	C1FJE4	DNA polymerase.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.988
MICPUN_60106	MICPUN_101999	C1EAK8	C1FGI8	CBFD_NFYB_HMF domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.999
MICPUN_60106	MICPUN_59616	C1EAK8	C1E962	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.759

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About