(12 nodes) Translesion synthesis network (Micromonas commoda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MICPUN_93665	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	MICPUN_75899	UmuC domain-containing protein. (306 aa)
	MICPUN_101999	DNA_pol_E_B domain-containing protein. (639 aa)
	MICPUN_58177	Fusion protein. (1323 aa)
	MICPUN_57509	UmuC domain-containing protein. (611 aa)
	MICPUN_75058	DNA polymerase. (768 aa)
	MICPUN_63857	Uncharacterized protein. (636 aa)
	MICPUN_59506	Uncharacterized protein. (619 aa)
	MICPUN_59091	Uncharacterized protein. (1443 aa)
	MICPUN_59128	Umuc-like DNA repair protein. (652 aa)
	MICPUN_68623	UmuC domain-containing protein. (410 aa)
	MICPUN_56475	BRCT like protein. (855 aa)

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MICPUN_101999	MICPUN_56475	C1FGI8	C1DZN6	DNA_pol_E_B domain-containing protein.	BRCT like protein.	0.427
MICPUN_101999	MICPUN_57509	C1FGI8	C1E586	DNA_pol_E_B domain-containing protein.	UmuC domain-containing protein.	0.430
MICPUN_101999	MICPUN_59128	C1FGI8	C1E7T2	DNA_pol_E_B domain-containing protein.	Umuc-like DNA repair protein.	0.430
MICPUN_101999	MICPUN_68623	C1FGI8	C1E418	DNA_pol_E_B domain-containing protein.	UmuC domain-containing protein.	0.644
MICPUN_101999	MICPUN_75058	C1FGI8	C1EFP4	DNA_pol_E_B domain-containing protein.	DNA polymerase.	0.933
MICPUN_101999	MICPUN_75899	C1FGI8	C1DYT2	DNA_pol_E_B domain-containing protein.	UmuC domain-containing protein.	0.427
MICPUN_101999	MICPUN_93665	C1FGI8	C1E1A5	DNA_pol_E_B domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.830
MICPUN_56475	MICPUN_101999	C1DZN6	C1FGI8	BRCT like protein.	DNA_pol_E_B domain-containing protein.	0.427
MICPUN_56475	MICPUN_57509	C1DZN6	C1E586	BRCT like protein.	UmuC domain-containing protein.	0.810
MICPUN_56475	MICPUN_59128	C1DZN6	C1E7T2	BRCT like protein.	Umuc-like DNA repair protein.	0.810
MICPUN_56475	MICPUN_68623	C1DZN6	C1E418	BRCT like protein.	UmuC domain-containing protein.	0.923
MICPUN_56475	MICPUN_75058	C1DZN6	C1EFP4	BRCT like protein.	DNA polymerase.	0.950
MICPUN_56475	MICPUN_93665	C1DZN6	C1E1A5	BRCT like protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.912
MICPUN_57509	MICPUN_101999	C1E586	C1FGI8	UmuC domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.430
MICPUN_57509	MICPUN_56475	C1E586	C1DZN6	UmuC domain-containing protein.	BRCT like protein.	0.810
MICPUN_57509	MICPUN_58177	C1E586	C1E4W2	UmuC domain-containing protein.	Fusion protein.	0.422
MICPUN_57509	MICPUN_59091	C1E586	C1E7P6	UmuC domain-containing protein.	Uncharacterized protein.	0.422
MICPUN_57509	MICPUN_59506	C1E586	C1E8V5	UmuC domain-containing protein.	Uncharacterized protein.	0.422
MICPUN_57509	MICPUN_68623	C1E586	C1E418	UmuC domain-containing protein.	UmuC domain-containing protein.	0.616
MICPUN_57509	MICPUN_75058	C1E586	C1EFP4	UmuC domain-containing protein.	DNA polymerase.	0.841

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