STRINGSTRING
MICPUN_63153 MICPUN_63153 MICPUN_106336 MICPUN_106336 MICPUN_113535 MICPUN_113535 MICPUN_107163 MICPUN_107163 rpl20 rpl20 rps19 rps19 rpl23 rpl23 rps7 rps7 rps11 rps11 MICPUN_107179 MICPUN_107179 MICPUN_85635 MICPUN_85635 MICPUN_91476 MICPUN_91476 MICPUN_84175 MICPUN_84175 MICPUN_65101 MICPUN_65101 MICPUN_76243 MICPUN_76243 MICPUN_94842 MICPUN_94842 MICPUN_97729 MICPUN_97729 RPS28E RPS28E MICPUN_93101 MICPUN_93101 MICPUN_93045 MICPUN_93045 MICPUN_89585 MICPUN_89585 RPS14 RPS14 SNRPD2|FCP1 SNRPD2|FCP1 Nop53 Nop53 MICPUN_70252 MICPUN_70252 MICPUN_104304 MICPUN_104304 MICPUN_87987 MICPUN_87987 MICPUN_64078 MICPUN_64078 LUC7 LUC7 MICPUN_67331 MICPUN_67331 MICPUN_70830 MICPUN_70830 MICPUN_103809 MICPUN_103809 MICPUN_63582 MICPUN_63582 MICPUN_87780 MICPUN_87780 MICPUN_63388 MICPUN_63388 MICPUN_63373 MICPUN_63373 MICPUN_68903 MICPUN_68903 MICPUN_63767 MICPUN_63767 MICPUN_92321 MICPUN_92321 MICPUN_98268 MICPUN_98268 EIF EIF MICPUN_95428 MICPUN_95428 MICPUN_109123 MICPUN_109123 MICPUN_62217 MICPUN_62217 MICPUN_71990 MICPUN_71990 MICPUN_61417 MICPUN_61417 PWP2 PWP2 MICPUN_61227 MICPUN_61227 MICPUN_91574 MICPUN_91574 MICPUN_108678 MICPUN_108678 MICPUN_94701 MICPUN_94701 MICPUN_70696 MICPUN_70696 MICPUN_60000 MICPUN_60000 MICPUN_59947 MICPUN_59947 MICPUN_83748 MICPUN_83748 MICPUN_94652 MICPUN_94652 MICPUN_59587 MICPUN_59587 MICPUN_108491 MICPUN_108491 MICPUN_82637 MICPUN_82637 MICPUN_100998 MICPUN_100998 MICPUN_59166 MICPUN_59166 MICPUN_108364 MICPUN_108364 MICPUN_97374 MICPUN_97374 MICPUN_58485 MICPUN_58485 MICPUN_108235 MICPUN_108235 MICPUN_81470 MICPUN_81470 MICPUN_100357 MICPUN_100357 MICPUN_58329 MICPUN_58329 MICPUN_108173 MICPUN_108173 MICPUN_58044 MICPUN_58044 MICPUN_58041 MICPUN_58041 MICPUN_100159 MICPUN_100159 LSM4 LSM4 MICPUN_80840 MICPUN_80840 MICPUN_100038 MICPUN_100038 MICPUN_66775 MICPUN_66775 MICPUN_56819 MICPUN_56819 MICPUN_56609 MICPUN_56609 MICPUN_56138 MICPUN_56138 MICPUN_78752 MICPUN_78752 MICPUN_107814 MICPUN_107814 MICPUN_78847 MICPUN_78847 MICPUN_56120 MICPUN_56120 MICPUN_63254 MICPUN_63254 MICPUN_107171 MICPUN_107171 MICPUN_98172 MICPUN_98172
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MICPUN_63153Lipase_3 domain-containing protein. (493 aa)
MICPUN_106336PAF1 complex protein. (435 aa)
MICPUN_113535SUI1 domain-containing protein. (165 aa)
MICPUN_107163MPN domain-containing protein. (2336 aa)
rpl2050S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (116 aa)
rps1930S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rpl2350S ribosomal protein L23, chloroplastic; Binds to 23S rRNA. (87 aa)
rps730S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (156 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (153 aa)
MICPUN_107179Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (519 aa)
MICPUN_85635Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (261 aa)
MICPUN_91476Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (144 aa)
MICPUN_84175Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (123 aa)
MICPUN_65101Uncharacterized protein. (1556 aa)
MICPUN_76243VWFA domain-containing protein. (284 aa)
MICPUN_94842Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (292 aa)
MICPUN_97729Tr-type G domain-containing protein. (463 aa)
RPS28EUncharacterized protein. (64 aa)
MICPUN_93101Suf domain-containing protein. (816 aa)
MICPUN_93045Ribosomal_L16 domain-containing protein. (228 aa)
MICPUN_89585Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (147 aa)
RPS14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
SNRPD2|FCP1Small nuclear ribonucleoprotein Sm D2. (101 aa)
Nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (463 aa)
MICPUN_70252Prp18 domain-containing protein. (157 aa)
MICPUN_104304Brix domain-containing protein. (413 aa)
MICPUN_87987Sm domain-containing protein. (86 aa)
MICPUN_64078RPOL4c domain-containing protein. (158 aa)
LUC7U1 snRNA associated protein. (360 aa)
MICPUN_67331Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (460 aa)
MICPUN_70830Brix domain-containing protein. (292 aa)
MICPUN_103809PUA domain-containing protein. (186 aa)
MICPUN_63582Uncharacterized protein. (424 aa)
MICPUN_8778050S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
MICPUN_63388mRNA splicing protein. (930 aa)
MICPUN_63373Matrin-type domain-containing protein. (262 aa)
MICPUN_68903Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (292 aa)
MICPUN_63767Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
MICPUN_9232160S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
MICPUN_98268RuvB-like helicase; Belongs to the RuvB family. (466 aa)
EIFEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (717 aa)
MICPUN_95428Uncharacterized protein. (274 aa)
MICPUN_109123RuvB-like helicase; Belongs to the RuvB family. (421 aa)
MICPUN_62217Uncharacterized protein. (295 aa)
MICPUN_71990RRM domain-containing protein. (169 aa)
MICPUN_61417Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (306 aa)
PWP2U3 snoRNA-associated protein 1 Pwp2. (904 aa)
MICPUN_61227RRM domain-containing protein. (290 aa)
MICPUN_91574SUI1 domain-containing protein. (591 aa)
MICPUN_108678Uncharacterized protein. (200 aa)
MICPUN_94701Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (973 aa)
MICPUN_70696Brix domain-containing protein. (259 aa)
MICPUN_60000Uncharacterized protein. (249 aa)
MICPUN_59947Uncharacterized protein. (220 aa)
MICPUN_83748Uncharacterized protein. (308 aa)
MICPUN_94652WD_REPEATS_REGION domain-containing protein. (300 aa)
MICPUN_59587Uncharacterized protein; Belongs to the eIF-3 subunit D family. (531 aa)
MICPUN_108491Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (428 aa)
MICPUN_82637KH type-2 domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (365 aa)
MICPUN_100998Uncharacterized protein. (645 aa)
MICPUN_59166PCI domain-containing protein. (398 aa)
MICPUN_10836440S ribosomal protein S27. (86 aa)
MICPUN_97374Uncharacterized protein. (662 aa)
MICPUN_58485Uncharacterized protein. (463 aa)
MICPUN_108235Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (355 aa)
MICPUN_81470Wd-40 repeat family protein/notchless protein. (495 aa)
MICPUN_100357J domain-containing protein. (299 aa)
MICPUN_58329Small nuclear ribonucleoprotein G. (81 aa)
MICPUN_108173Ribosomal_L18_c domain-containing protein. (297 aa)
MICPUN_58044Uncharacterized protein. (370 aa)
MICPUN_58041Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (117 aa)
MICPUN_100159HIT-type domain-containing protein. (307 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (123 aa)
MICPUN_80840Uncharacterized protein. (355 aa)
MICPUN_100038HIT-type domain-containing protein. (491 aa)
MICPUN_66775Uncharacterized protein. (403 aa)
MICPUN_56819SF3b1 domain-containing protein. (1242 aa)
MICPUN_56609Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (317 aa)
MICPUN_56138W2 domain-containing protein. (456 aa)
MICPUN_78752Uncharacterized protein. (483 aa)
MICPUN_10781440S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (296 aa)
MICPUN_78847eIF2B_5 domain-containing protein. (233 aa)
MICPUN_56120Uncharacterized protein. (369 aa)
MICPUN_63254Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (69 aa)
MICPUN_107171Uncharacterized protein. (143 aa)
MICPUN_98172Uncharacterized protein. (2072 aa)
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
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