55 items (Micromonas commoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RLP24	TRASH domain-containing protein. (170 aa)
	MICPUN_93045	Ribosomal_L16 domain-containing protein. (228 aa)
	MICPUN_93104	Uncharacterized protein. (199 aa)
	MICPUN_55312	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (237 aa)
	RPL19	60S ribosomal protein L19. (195 aa)
	MICPUN_90970	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	MICPUN_56442	Uncharacterized protein. (51 aa)
	RPL37E	Ribosomal protein L37; Binds to the 23S rRNA. (96 aa)
	MICPUN_106801	Uncharacterized protein. (238 aa)
	rpl23	50S ribosomal protein L23, chloroplastic; Binds to 23S rRNA. (87 aa)
	rpl2	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (277 aa)
	MICPUN_63216	Ribosomal_TL5_C domain-containing protein. (226 aa)
	MICPUN_87366	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (57 aa)
	MICPUN_63254	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (69 aa)
	MICPUN_52392	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (141 aa)
	MICPUN_91456	Uncharacterized protein. (133 aa)
	MICPUN_90540	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (319 aa)
	MICPUN_97280	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (176 aa)
	MICPUN_106868	Ribosomal l9-like protein. (190 aa)
	MICPUN_108173	Ribosomal_L18_c domain-containing protein. (297 aa)
	MICPUN_94088	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	MICPUN_57540	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (188 aa)
	MICPUN_90780	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (220 aa)
	MICPUN_94345	Ribosomal_L7Ae domain-containing protein. (115 aa)
	MICPUN_52633	Ribosomal_L28e domain-containing protein. (138 aa)
	MICPUN_62094	Ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (126 aa)
	MICPUN_109019	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (117 aa)
	MICPUN_108826	Uncharacterized protein. (108 aa)
	MICPUN_91476	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (144 aa)
	MICPUN_90144	Uncharacterized protein. (118 aa)
	MICPUN_91199	Uncharacterized protein. (110 aa)
	MICPUN_91267	KOW domain-containing protein. (144 aa)
	MICPUN_108678	Uncharacterized protein. (200 aa)
	MICPUN_107054	Uncharacterized protein. (135 aa)
	MICPUN_86588	Uncharacterized protein. (115 aa)
	MICPUN_95416	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	MICPUN_95460	Ribosomal_L2_C domain-containing protein. (261 aa)
	MICPUN_106274	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (107 aa)
	MICPUN_92304	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (169 aa)
	MICPUN_92321	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	MICPUN_64167	Ribosomal protein L18. (386 aa)
	MICPUN_95986	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (106 aa)
	MICPUN_95995	Uncharacterized protein. (168 aa)
	MICPUN_96004	Ribos_L4_asso_C domain-containing protein. (395 aa)
	MICPUN_104458	Uncharacterized protein. (519 aa)
	MICPUN_98429	Ribosomal_L2_C domain-containing protein. (302 aa)
	MICPUN_107645	Ribosomal_L7Ae domain-containing protein. (249 aa)
	MICPUN_93345	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (189 aa)
	MICPUN_53957	Ribosomal_L14e domain-containing protein. (130 aa)
	MICPUN_89851	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (385 aa)
	RPL11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (170 aa)
	MICPUN_107597	Uncharacterized protein. (123 aa)
	MICPUN_106714	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	MICPUN_72411	Uncharacterized protein. (220 aa)
	RPL36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (102 aa)

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MICPUN_104458	MICPUN_106274	C1EIL4	C1EEH7	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.985
MICPUN_104458	MICPUN_106714	C1EIL4	C1FEF5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.978
MICPUN_104458	MICPUN_106801	C1EIL4	C1E1M5	Uncharacterized protein.	Uncharacterized protein.	0.988
MICPUN_104458	MICPUN_107054	C1EIL4	C1ED76	Uncharacterized protein.	Uncharacterized protein.	0.987
MICPUN_104458	MICPUN_107597	C1EIL4	C1FEF9	Uncharacterized protein.	Uncharacterized protein.	0.951
MICPUN_104458	MICPUN_107645	C1EIL4	C1DZB0	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.989
MICPUN_104458	MICPUN_108173	C1EIL4	C1E4X6	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.991
MICPUN_104458	MICPUN_108678	C1EIL4	C1EB36	Uncharacterized protein.	Uncharacterized protein.	0.990
MICPUN_104458	MICPUN_108826	C1EIL4	C1FGS8	Uncharacterized protein.	Uncharacterized protein.	0.987
MICPUN_104458	MICPUN_109019	C1EIL4	C1FGX4	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.843
MICPUN_104458	MICPUN_52392	C1EIL4	C1E2S1	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.848
MICPUN_104458	MICPUN_52633	C1EIL4	C1FII6	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.987
MICPUN_104458	MICPUN_53957	C1EIL4	C1DYW9	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.991
MICPUN_104458	MICPUN_55312	C1EIL4	C1FE55	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.980
MICPUN_104458	MICPUN_56442	C1EIL4	C1DZR9	Uncharacterized protein.	Uncharacterized protein.	0.989
MICPUN_104458	MICPUN_57540	C1EIL4	C1E5B6	Uncharacterized protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.975
MICPUN_104458	MICPUN_62094	C1EIL4	C1FHI4	Uncharacterized protein.	Ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.	0.983
MICPUN_104458	MICPUN_63216	C1EIL4	C1FIU8	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.719
MICPUN_104458	MICPUN_63254	C1EIL4	C1FIR1	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.985
MICPUN_104458	MICPUN_64167	C1EIL4	C1EHB6	Uncharacterized protein.	Ribosomal protein L18.	0.975

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