35 items (Micromonas commoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MICPUN_71990	RRM domain-containing protein. (169 aa)
	MICPUN_65684	Uncharacterized protein. (578 aa)
	PWP2	U3 snoRNA-associated protein 1 Pwp2. (904 aa)
	MICPUN_65501	WD_REPEATS_REGION domain-containing protein. (950 aa)
	MICPUN_109558	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (82 aa)
	MICPUN_64652	Uncharacterized protein. (249 aa)
	MICPUN_104488	WD_REPEATS_REGION domain-containing protein. (724 aa)
	RPS14	Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	MICPUN_65205	Bms1-type G domain-containing protein. (1120 aa)
	MICPUN_66494	Bms1-type G domain-containing protein. (571 aa)
	UTP6	Uncharacterized protein. (289 aa)
	RPS28E	Uncharacterized protein. (64 aa)
	MICPUN_60565	Uncharacterized protein; Belongs to the NOB1 family. (535 aa)
	MICPUN_69191	S4 RNA-binding domain-containing protein. (257 aa)
	MICPUN_101993	Kri1_C domain-containing protein. (748 aa)
	MICPUN_102725	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (943 aa)
	MICPUN_85803	WD_REPEATS_REGION domain-containing protein. (551 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (153 aa)
	MICPUN_83206	WD_REPEATS_REGION domain-containing protein. (875 aa)
	MICPUN_59233	Sas10 domain-containing protein. (774 aa)
	MICPUN_82627	Uncharacterized protein. (643 aa)
	MICPUN_59039	Sm domain-containing protein. (86 aa)
	MICPUN_81845	Uncharacterized protein. (1204 aa)
	MICPUN_58412	Uncharacterized protein. (668 aa)
	MICPUN_57945	BP28CT domain-containing protein. (2385 aa)
	MICPUN_51754	WD_REPEATS_REGION domain-containing protein. (459 aa)
	MICPUN_56097	Uncharacterized protein. (321 aa)
	MICPUN_89886	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	MICPUN_72212	Uncharacterized protein. (221 aa)
	MICPUN_79518	RIO domain-containing protein. (363 aa)
	MICPUN_93705	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	MICPUN_67228	Uncharacterized protein; Belongs to the DEAD box helicase family. (432 aa)
	MICPUN_95694	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (215 aa)
	MICPUN_86520	Uncharacterized protein. (202 aa)
	MICPUN_62728	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (353 aa)

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MICPUN_101993	MICPUN_102725	C1FGH7	C1FH62	Kri1_C domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.726
MICPUN_101993	MICPUN_104488	C1FGH7	C1EIQ6	Kri1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.543
MICPUN_101993	MICPUN_59233	C1FGH7	C1E834	Kri1_C domain-containing protein.	Sas10 domain-containing protein.	0.852
MICPUN_101993	MICPUN_60565	C1FGH7	C1FFM3	Kri1_C domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.542
MICPUN_101993	MICPUN_62728	C1FGH7	C1EES6	Kri1_C domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.550
MICPUN_101993	MICPUN_65205	C1FGH7	C1FDT9	Kri1_C domain-containing protein.	Bms1-type G domain-containing protein.	0.809
MICPUN_101993	MICPUN_65501	C1FGH7	C1EGB1	Kri1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.478
MICPUN_101993	MICPUN_65684	C1FGH7	C1ECM3	Kri1_C domain-containing protein.	Uncharacterized protein.	0.900
MICPUN_101993	MICPUN_66494	C1FGH7	C1FE70	Kri1_C domain-containing protein.	Bms1-type G domain-containing protein.	0.586
MICPUN_101993	MICPUN_67228	C1FGH7	C1E3B0	Kri1_C domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.452
MICPUN_101993	MICPUN_71990	C1FGH7	C1ECQ9	Kri1_C domain-containing protein.	RRM domain-containing protein.	0.534
MICPUN_101993	MICPUN_81845	C1FGH7	C1E6T6	Kri1_C domain-containing protein.	Uncharacterized protein.	0.490
MICPUN_101993	MICPUN_83206	C1FGH7	C1E9E7	Kri1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.516
MICPUN_101993	MICPUN_85803	C1FGH7	C1FI30	Kri1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.756
MICPUN_101993	MICPUN_86520	C1FGH7	C1EEX1	Kri1_C domain-containing protein.	Uncharacterized protein.	0.528
MICPUN_101993	PWP2	C1FGH7	C1EBY4	Kri1_C domain-containing protein.	U3 snoRNA-associated protein 1 Pwp2.	0.657
MICPUN_101993	UTP6	C1FGH7	C1FE88	Kri1_C domain-containing protein.	Uncharacterized protein.	0.414
MICPUN_102725	MICPUN_101993	C1FH62	C1FGH7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Kri1_C domain-containing protein.	0.726
MICPUN_102725	MICPUN_104488	C1FH62	C1EIQ6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.996
MICPUN_102725	MICPUN_57945	C1FH62	C1E483	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	BP28CT domain-containing protein.	0.996

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