STRINGSTRING
MICPUN_68903 MICPUN_68903 MICPUN_92321 MICPUN_92321 MICPUN_71990 MICPUN_71990 MICPUN_97868 MICPUN_97868 PWP2 PWP2 MICPUN_61227 MICPUN_61227 MICPUN_107814 MICPUN_107814 MICPUN_66775 MICPUN_66775 MICPUN_105354 MICPUN_105354 MICPUN_74471 MICPUN_74471 MICPUN_81292 MICPUN_81292 MICPUN_108173 MICPUN_108173 MICPUN_81470 MICPUN_81470 MICPUN_81410 MICPUN_81410 MICPUN_58756 MICPUN_58756 MICPUN_108364 MICPUN_108364 MICPUN_82637 MICPUN_82637 MICPUN_70696 MICPUN_70696 MICPUN_91476 MICPUN_91476 MICPUN_65101 MICPUN_65101 MICPUN_76243 MICPUN_76243 EIF6 EIF6 RPS28E RPS28E MICPUN_93045 MICPUN_93045 rps7 rps7 rpl23 rpl23 rps19 rps19 rpl20 rpl20 MICPUN_107171 MICPUN_107171 MICPUN_85635 MICPUN_85635 rps11 rps11 MICPUN_54956 MICPUN_54956 Nop53 Nop53 MICPUN_104304 MICPUN_104304 MICPUN_108678 MICPUN_108678 MICPUN_70830 MICPUN_70830 MICPUN_87780 MICPUN_87780 MICPUN_89585 MICPUN_89585 RPS14 RPS14
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MICPUN_68903Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (292 aa)
MICPUN_9232160S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
MICPUN_71990RRM domain-containing protein. (169 aa)
MICPUN_97868Tr-type G domain-containing protein. (992 aa)
PWP2U3 snoRNA-associated protein 1 Pwp2. (904 aa)
MICPUN_61227RRM domain-containing protein. (290 aa)
MICPUN_10781440S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (296 aa)
MICPUN_66775Uncharacterized protein. (403 aa)
MICPUN_105354Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (196 aa)
MICPUN_74471Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (106 aa)
MICPUN_81292Uncharacterized protein. (181 aa)
MICPUN_108173Ribosomal_L18_c domain-containing protein. (297 aa)
MICPUN_81470Wd-40 repeat family protein/notchless protein. (495 aa)
MICPUN_8141060S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
MICPUN_58756Uncharacterized protein. (280 aa)
MICPUN_10836440S ribosomal protein S27. (86 aa)
MICPUN_82637KH type-2 domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (365 aa)
MICPUN_70696Brix domain-containing protein. (259 aa)
MICPUN_91476Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (144 aa)
MICPUN_65101Uncharacterized protein. (1556 aa)
MICPUN_76243VWFA domain-containing protein. (284 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
RPS28EUncharacterized protein. (64 aa)
MICPUN_93045Ribosomal_L16 domain-containing protein. (228 aa)
rps730S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (156 aa)
rpl2350S ribosomal protein L23, chloroplastic; Binds to 23S rRNA. (87 aa)
rps1930S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rpl2050S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (116 aa)
MICPUN_107171Uncharacterized protein. (143 aa)
MICPUN_85635Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (261 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (153 aa)
MICPUN_54956Uncharacterized protein. (167 aa)
Nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (463 aa)
MICPUN_104304Brix domain-containing protein. (413 aa)
MICPUN_108678Uncharacterized protein. (200 aa)
MICPUN_70830Brix domain-containing protein. (292 aa)
MICPUN_8778050S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
MICPUN_89585Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (147 aa)
RPS14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
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